BAC Information

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BAC

Clone NameMSMg01-528F20
ChromosomeX (Build37)
Map Location 6,772,498 - 6,773,157
singlet/doubletsinglet
Overlap genenone
Upstream geneBmp15, Shroom4, LOC100043937, Dgkk, Ccnb3, Akap4, Clcn5
Downstream geneUsp27x, 2010204K13Rik, LOC668973, Ppp1r3f, 4930524L23Rik, Foxp3, Ccdc22, Cacna1f, Syp, LOC632264, Lmo6, Plp2, Pdzx, Ppia-psx_14.1, Gpkow, LOC100043938, Wdr45, Praf2, Ccdc120, EG236622, Tcfe3, Gripap1, LOC100043939, Kcnd1, Otud5, Pim2, Slc35a2, Pqbp1, Timm17b, Pcsk1n, Eras, Hdac6, LOC668974, Gata1, Glod5, LOC668975, EG627737, EG632013, Suv39h1, Was, EG627782, Wdr13, Rbm3, Tbc1d25, Ebp, Porcn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-528F20.T7 (MSMg01no528_f20.b1)MSMg01-528F20.TJ (MSMg01no528_f20.g1)
ACCAG597498AG597499
length734726
length of high quality
(start - end)		667 (54 - 720)405 (84 - 488)
definitionCHROMAT_FILE: MSMg01no528_f20.b1 PHD_FILE: MSMg01no528_f20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:03:56 2005CHROMAT_FILE: MSMg01no528_f20.g1 PHD_FILE: MSMg01no528_f20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:03:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTTTTTTCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCCTCTTAAAGCCAGCTCTGTTTGGACACAGCAGTATAC
ATGTTCCTCACTGCAGTGCTGACTAGAGTACTACAAACCTGGGATCAATG
ATTGGTCCAGTCCCGTGGGACTGACGTGCTTTGAGACATTTCGGGGAGGG
AGGGTGGGGATAAGAAAAAGAGAGTTTGACATGATGATGCATGCCCATAA
TCCTAGCCTTGGGAGGCTGAGGCAGGAGGATTAGCACAAATTTCATCTTA
AGACCCTCAAAAATCAGAGAGAAAGAGCTTGAAAGAGTCAGAGACAGTCA
GTCTATGGGCATAACTAGATCCAGACTGTGAGTTATATCTGGAGTAGGAA
GAAGAGGGGGACTTCTGCATGACACTGACTAGATACTATGTGAATTTCAG
TATTTTATGTGCTAGGACTGAAACCCATGGCCTTGCACACACTAGGCAAG
TGTTCTACCCAACACTGAGCTACTTTTCCAGAGTCCATAGGAATAATTTT
AAAAGAAGAAGAAGAGCCAGGCACTGGTGGTGCACACCTTTAATCCCAGC
ACTTGGGAGGCAGAGGCAAGCGGATTTCTGAGTTCGAGGCCAGCCTGGTC
TACAGAGTGAGTGCAAAGAGCAGAAGCATGTTCCAGGAGGCAGAGCACTG
GAGTATTTAGAGACAGAGCCAGAGACAATTTCTN

TTTTTTTTCCATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGAAGTCTTTACTTT
CATTCTTTATTTCTTCCCTGACCAACTTATCACTGAGTACAGAGTTGTTC
AGTTTCCATGTGTATGTGGGTTTTCTGTTGTTTTTGTCATTATTGAAGAC
CAGCCTTAGGCGTGATGCTCTGATAGGATGCATGGGATTATTTCAGTCTT
CTCATATCTGTTGAGGTTTGTTTTGTGACCAATTATATGGCCACTTTTGG
AGAAGGTACCAGGAGGTACTGAAAAGGTCTATTCTTTTGTTTTAGGGTAA
AGTACAGAATTCCCAGGATACAATCCACGCAACTTAAGAAGGCTAACAAG
CCAAAGGGCCTAAGTGAGGATGCCACAATACCATGTGGGAGGGAGAAGAA
AGCAATCACAGGAGCGGGGGTGGGGGGTGGGGGTGGGNTNNNNTNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNTNNNNNNNNTTTTNNTTTTNTTTT
TTNTTTTTTTTTTTTTTTTTNTTTTTTTTTNTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTNTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTNTTT
TTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTT
TTTTTTTTTTTTNTTTTTTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no528_f20.b1 MSMg01no528_f20.b1 CHROMAT_FILE:
MSMg01no528_f20.b1 PHD_FILE: MSMg01no528_f20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:56 2005
         (667 letters)



>mm_chrX_6772294_6773360
          Length = 1067

 Score = 1239 bits (641), Expect = 0.0
 Identities = 657/663 (99%), Gaps = 3/663 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctcttaaagccagctctgtttggacacagcagtatacatgttcctcactgcagt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctcttaaagccagctctgtttggacacagcagtatacatgttcctcactgcagt 264

                                                                       
Query: 65  gctgactagagtactacaaacctgggatcaatgattggtccagtcccgtgggactgacgt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gctgactagagtactacaaacctgggatcaatgattggtccagtcccgtgggactgacgt 324

                                                                       
Query: 125 gctttgagacatttcggggagggagggtggggataagaaaaagagagtttgacatgatga 184
           |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||
Sbjct: 325 gctttgagacatttcggggagggagggtggggataagaaaaagag--tttgacatgatga 382

                                                                       
Query: 185 tgcatgcccataatcctagccttgggaggctgaggcaggaggattagcacaaatttcatc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 383 tgcatgcccataatcctagccttgggaggctgaggcaggaggattagcacagatttcatc 442

                                                                       
Query: 245 ttaagaccctcaaaaatcagagagaaagagcttgaaagagtcagagacagtcagtctatg 304
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 443 ttaagaccctcaaaaatcagagagaaagagcttgaaagagtcagagacggtcagtctatg 502

                                                                       
Query: 305 ggcataactagatccagactgtgagttatatctggagtaggaagaagagggggacttctg 364
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 g-cataactagatccagactgtgagttatatctggagtaggaagaagagggggacttctg 561

                                                                       
Query: 365 catgacactgactagatactatgtgaatttcagtattttatgtgctaggactgaaaccca 424
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 562 catgacactgactagatactatgtgaatttcagtgttttatgtgctaggactgaaaccca 621

                                                                       
Query: 425 tggccttgcacacactaggcaagtgttctacccaacactgagctacttttccagagtcca 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 tggccttgcacacactaggcaagtgttctacccaacactgagctacttttccagagtcca 681

                                                                       
Query: 485 taggaataattttaaaagaagaagaagagccaggcactggtggtgcacacctttaatccc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 taggaataattttaaaagaagaagaagagccaggcactggtggtgcacacctttaatccc 741

                                                                       
Query: 545 agcacttgggaggcagaggcaagcggatttctgagttcgaggccagcctggtctacagag 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 agcacttgggaggcagaggcaagcggatttctgagttcgaggccagcctggtctacagag 801

                                                                       
Query: 605 tgagtgcaaagagcagaagcatgttccaggaggcagagcactggagtatttagagacaga 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 tgagtgcaaagagcagaagcatgttccaggaggcagagcactggagtatttagagacaga 861

              
Query: 665 gcc 667
           |||
Sbjct: 862 gcc 864


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1067
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1057
Effective search space:   694449
Effective search space used:   694449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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