BAC Information

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BAC

Clone NameMSMg01-529N19
ChromosomeX (Build37)
Map Location 79,016,810 - 79,017,158
singlet/doubletsinglet
Overlap genenone
Upstream geneTmem47, LOC100041462, LOC100041474, 4930595M18Rik
Downstream geneEG667799, EG629310
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-529N19.T7 (MSMg01no529_n19.b1)MSMg01-529N19.TJ (MSMg01no529_n19.g1)
ACCAG598640AG598641
length768773
length of high quality
(start - end)		727 (42 - 768)696 (71 - 766)
definitionCHROMAT_FILE: MSMg01no529_n19.b1 PHD_FILE: MSMg01no529_n19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:05:59 2005CHROMAT_FILE: MSMg01no529_n19.g1 PHD_FILE: MSMg01no529_n19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:05:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCACAAGTTTCTGCAGGTAGAGGTCCAAAGACTCTGGTAGGCAGAGTTTG
AACTCCCATTTCTGGGGTTAATACTGCTTAGGTGGTAGAACAGAGGTCCA
ATCCTGCACCTCCAGGGTTTGACCTGACAAGTTCAAAAACTGATCTCTTT
GGTTGGGCATCAGGTTTACCGCCCAATAAACTCTTTGCTGTGAATGGGTC
GGGGCCTGGGGCTGGCCCCTTCTCTCGTTTCCCGGCAACGGATGTCCCAG
AATGCCTGGCTTAGATTTACATACCCCAGCCGAATGGTTTCCTTTCCTGC
ATCTGGGGCAGATCCGTGGGACACGGCACGCTTGCCCACTCTCAGCACCT
TTGTTCTTAGGACAATTACTTTTAAAATGATCCAAACTTCCACACTTAAA
TCATGCATTATTCCCTCATTTCTGCAAGAACATTGCTTGTATGGTGGTCC
CCTGTAAAGCAGTGCAAGATGGCCTGATGGCTGTGCAAAGACGGACATAT
CCCGTCAAATCAGTCTGTTCTTTGTGTGGCTGGATAGCGCCGCACACTTT
GCGTTAGCATTCTCATAAGCCAATTGCATAAAGAAAGAACTACCCCTGTC
AGATTTTCCAAGGATTCTAATAGCTGCTATTAATAGCCTGTCCACAAAAT
TCTGATAAATCTCATTGGGACCCTGCCGAATGCTGGCTAAGCTTCCACCA
AAATCTCCTTTAACCGCT

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTATCCCAGGTGGTTCCTGTTAGACCTTCTG
TGTTTGTATTTCTCTGTTTTATGTAAGAATCCAGTGACCTCTTTGTACCT
TGCGGGTGTGTAACCCAACTTCCTTATTTTCTTCTGTATAAAAAGTTTGA
TGCTCAATTTGACAAATTACATTCAGATTCTACACAACCTCTCCTGTGTG
CATTTGTCTGTCATTCCCTCCGACGCTTTGCCCACCTGCCCCAGAGACCT
GTTCCACACAGACAAAGGGATCCAGAGGGTCTGCGGCAGGTCTTGAGGTA
GAACTATCACCCATTATCTGAGAGACCACCAAACTGATTTCCAACGTGAC
TTCAAGTTTTTTCTCCCACCAGCAATGGAGGAGTGTTCTCCTTGATCCAC
ATCCTTGCCAGCCTGTACTATCACCTGTGTTTTTGTTTGTAGTCATTCTG
CTTGGTGTAAATTGGAATTTCAAAATTGTCTCAGTTTGCATTTCCTGGAT
GACTAAGAACTTTGAACATTATTTAAGCAGTGTAAAACTGTTTTTGTTTT
TTATTTTGTTTTTGTTTTTTAATGGCAGGTAAAATATCCTGAAACATACA
TAGATTCTGATAGTCTTCTTACCCCAATTGAATTCAAATTTTAAAGTAAC
ACACACAAGCTGAAAGAATTTGATATTGTTCCAAGGAACTTACTGAATCT
ACATGACTAGATGAAAATAAGAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no529_n19.g1 MSMg01no529_n19.g1 CHROMAT_FILE:
MSMg01no529_n19.g1 PHD_FILE: MSMg01no529_n19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:05:59 2005
         (696 letters)



>mm_chrX_79016063_79017158
          Length = 1096

 Score =  654 bits (338), Expect = 0.0
 Identities = 347/350 (99%), Gaps = 1/350 (0%)
 Strand = Plus / Minus

                                                                        
Query: 347  caccagcaatggaggagtgttctccttgatccacatccttgccagcctgtactatcacct 406
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1096 caccagcaatggaggagtgttctccttgatccacatccttgccagcctgtactatcacct 1037

                                                                        
Query: 407  gtgtttttgtttgtagtcattctgcttggtgtaaattggaatttcaaaattgtctcagtt 466
            |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1036 gtgtttttgtttgtagtcattctgcttggtgtaaattggaatttcaaagttgtctcagtt 977

                                                                        
Query: 467  tgcatttcctggatgactaagaactttgaacattatttaagcagtgtaaaactgtttttg 526
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 976  tgcatttcctggatgactaagatctttgaacattatttaagcagtgtaaaactgtttttg 917

                                                                        
Query: 527  ttttttattttgtttttgttttttaatggcaggtaaaatatcctgaaacatacatagatt 586
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 916  ttttt-attttgtttttgttttttaatggcaggtaaaatatcctgaaacatacatagatt 858

                                                                        
Query: 587  ctgatagtcttcttaccccaattgaattcaaattttaaagtaacacacacaagctgaaag 646
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 857  ctgatagtcttcttaccccaattgaattcaaattttaaagtaacacacacaagctgaaag 798

                                                              
Query: 647  aatttgatattgttccaaggaacttactgaatctacatgactagatgaaa 696
            ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797  aatttgatattgttccaaggaacttactgaatctacatgactagatgaaa 748


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 696
Length of database: 1096
Length adjustment: 10
Effective length of query: 686
Effective length of database: 1086
Effective search space:   744996
Effective search space used:   744996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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