BAC Information

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BAC

Clone NameMSMg01-531O08
ChromosomeX (Build37)
Map Location 45,773,431 - 45,773,887
singlet/doubletsinglet
Overlap geneElf4
Upstream geneEG434775, LOC236775, LOC100040133, LOC100040145, EG624187, Smarca1, LOC676253, Ocrl, LOC270596, LOC665672, Apln, Xpnpep2, 1200013B08Rik, Zdhhc9, Utp14a, LOC637576, Bcorl1
Downstream geneAifm1, Rab33a, Suhw3, Slc25a14, Gpr119, Rbmx2, LOC665752, Gm595, EG637758, LOC100040295, Enox2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-531O08.T7 (MSMg01no531_o08.b1)MSMg01-531O08.TJ (MSMg01no531_o08.g1)
ACCAG600185AG600186
length902747
length of high quality
(start - end)
186 (72 - 257)457 (85 - 541)
definitionCHROMAT_FILE: MSMg01no531_o08.b1 PHD_FILE: MSMg01no531_o08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:08:40 2005CHROMAT_FILE: MSMg01no531_o08.g1 PHD_FILE: MSMg01no531_o08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:08:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTTTTCCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCAGTGTATGTTTCTATGCTATTGATTCTGGTGATCAGA
CTCAGGTCCCATAATTGAAGTACAAGAACTGTATCTTGTTTTATTTAATT
CACACACTCACACACACACACACACACACACACTGATCACTCAAAAGATC
TCCACACAACAGCCGGGCGTGGTGGAACACGTCTGTAATCCCAGCACTTG
GGAGGTTTATTCAGGCGGATTTCTGAGTTCTAGACCTTCCCGTTCAACTT
AGTGATTTTTAGGACAGCCATTTTTTTTTTTTATATACCTTTTACTCTAT
ACACAAATGTACCTCTTCTTATAAACAACTCCTCACCGACTCTCTCAAAA
TCAATATCCTAATTCGTTCTTTTTCTTTCAAACCTCAGAGTTCTTCTTTA
TAACGCAAAAACACTCCCTTTTCTAATACTCCCTTTTTTCTCCTAATGAC
ACATACTCTATTTTCCCCTCCCCATTCCCTTTCCACCCCTCCCCCTATTA
CTCGTCATTTCCCATCCCATACGCAAATTAACTCTCATATTTACGGTTAT
AAGTTTTAGATAAGTTTTCCCGCCCCTTTTTATCCAACTTATTATTTTTA
CCTCTCCCATTTTTCACACATCATACTATTCTATCTATCCCCATTTACCC
TTCATCTACTCCCCCCTCTAATTCTTGCAATTCATCACACCCCTCATTTC
ACTAGTTCATACAATACCCTTTATTGTAATTCTCACACTATCTATTCGTT
CTAATACTGGCCCTCAATATCTTCACTTTCACCATCTCCTCTATAGCCCA
TCTCTATATCTATCAATTCGCCTTATTACTATTACTCCTATAACCCCATT
CN
CCTTTTCTCCATGTTTTTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGTATTCAAGTTCAA
ACTTACAGATCTGCTTCTCATCCAGGACATCACTGGGAGTTGCCACATTG
AATAGGACTTCAGTGGATGACACGTTATTTGAGGTGGATACATCATCATC
TGGTTCCAAGTTCCATGAAGTGGGAGGAGAAAGGAGAGCTTCATCAGGCT
TCAGAATAGTTAATAAAAGGGCCAACCCCAGGGGAGATGGGCTATGGTAC
AGCTAGGCAGATATCAGAGCTCCTCCCACCGAACCCCCTCCCCAAACTGG
TTTCCATTGTGGGCGCTACCCGGTCTGAGGAGTTTATGGATGGGCTAAGA
TGATTCCTTCCTCTTTTGTGGGAAGCATTGGTTGTTATGTGGGGCTATCA
GCAGCCACGGGGAGTTGCTTTTCCCTGAAGGCTGCTGCCCTTTCTCGGAC
CATACACCTTACCCGACCAGAAAAAAGAACAGACCTGTCAGCAAAATACT
GCCTTCTAAAATCTGATCCTGTGTCATGCACAAGGTCCTGTCCCTTATGA
TGCCATTGTGGACCTCATCCAGATCCAGTCCTGATCACAGATGCACTAAC
TCAGGATAGGGGACCTGTTCCACGATCACGGCTGGGAACACTGATTGGTC
TTCCAGCTATGGAGAAGAAAGAAATCTGATTCAGGTTTCCCCTCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no531_o08.g1 MSMg01no531_o08.g1 CHROMAT_FILE:
MSMg01no531_o08.g1 PHD_FILE: MSMg01no531_o08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:08:41 2005
         (457 letters)



>mm_chrX_45773231_45774087
          Length = 857

 Score =  876 bits (453), Expect = 0.0
 Identities = 456/457 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggtattcaagttcaaacttacagatctgcttctcatccaggacatcactgggagttgcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggtattcaagttcaaacttacagatctgcttctcatccaggacatcactgggagttgcc 260

                                                                       
Query: 61  acattgaataggacttcagtggatgacacgttatttgaggtggatacatcatcatctggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acattgaataggacttcagtggatgacacgttatttgaggtggatacatcatcatctggt 320

                                                                       
Query: 121 tccaagttccatgaagtgggaggagaaaggagagcttcatcaggcttcagaatagttaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tccaagttccatgaagtgggaggagaaaggagagcttcatcaggcttcagaatagttaat 380

                                                                       
Query: 181 aaaagggccaaccccaggggagatgggctatggtacagctaggcagatatcagagctcct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaagggccaaccccaggggagatgggctatggtacagctaggcagatatcagagctcct 440

                                                                       
Query: 241 cccaccgaaccccctccccaaactggtttccattgtgggcgctacccggtctgaggagtt 300
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cccaccgacccccctccccaaactggtttccattgtgggcgctacccggtctgaggagtt 500

                                                                       
Query: 301 tatggatgggctaagatgattccttcctcttttgtgggaagcattggttgttatgtgggg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tatggatgggctaagatgattccttcctcttttgtgggaagcattggttgttatgtgggg 560

                                                                       
Query: 361 ctatcagcagccacggggagttgcttttccctgaaggctgctgccctttctcggaccata 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctatcagcagccacggggagttgcttttccctgaaggctgctgccctttctcggaccata 620

                                                
Query: 421 caccttacccgaccagaaaaaagaacagacctgtcag 457
           |||||||||||||||||||||||||||||||||||||
Sbjct: 621 caccttacccgaccagaaaaaagaacagacctgtcag 657


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 857
Length adjustment: 10
Effective length of query: 447
Effective length of database: 847
Effective search space:   378609
Effective search space used:   378609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)