BAC Information

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BAC

Clone NameMSMg01-532F24
ChromosomeX (Build37)
Map Location 6,753,505 - 6,754,058
singlet/doubletsinglet
Overlap geneClcn5
Upstream geneBmp15, Shroom4, LOC100043937, Dgkk, Ccnb3, Akap4
Downstream geneUsp27x, 2010204K13Rik, LOC668973, Ppp1r3f, 4930524L23Rik, Foxp3, Ccdc22, Cacna1f, Syp, LOC632264, Lmo6, Plp2, Pdzx, Ppia-psx_14.1, Gpkow, LOC100043938, Wdr45, Praf2, Ccdc120, EG236622, Tcfe3, Gripap1, LOC100043939, Kcnd1, Otud5, Pim2, Slc35a2, Pqbp1, Timm17b, Pcsk1n, Eras, Hdac6, LOC668974, Gata1, Glod5, LOC668975, EG627737, EG632013, Suv39h1, Was, EG627782, Wdr13, Rbm3, Tbc1d25
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-532F24.T7 (MSMg01no532_f24.b1)MSMg01-532F24.TJ (MSMg01no532_f24.g1)
ACCAG600550AG600551
length743746
length of high quality
(start - end)		658 (54 - 711)648 (83 - 730)
definitionCHROMAT_FILE: MSMg01no532_f24.b1 PHD_FILE: MSMg01no532_f24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:09:17 2005CHROMAT_FILE: MSMg01no532_f24.g1 PHD_FILE: MSMg01no532_f24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:09:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNAAACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTACAGTTCTTTCCGCAACGGTACTGTAACTGTACTTC
ATAGCAACTAATGATCGATAGAAGGCTGAGCAGTGGGCCCAAGGCCATGT
GTGTGCTAGGTAATCCGAGCTCTAATAGTGAACCACATCCCCTTCTTATA
TATTTTAAAAAGAAGTAGAAGGAGTTAGAAGGTTTTGAAGAAAGAAATAT
GAAATATTTAAGTAAGTAAAAATGCTAATATTATGATTTAAAGTCTATAC
CTTATATAAACAAGTATCAAAGCATCATACTATACTTTTAAAAGCATACA
TAATCATAAGTCAACTAAAAATAAATTTTAAATAATTTTACCATCCACCA
TGTTCACAAAACATTTGAGGTGGCATGTGCACACACACACACACACACAC
ACACACACACACACACACACACACACTGCAGTAAGTCAACTGAAAAGGAT
AGGAAAAATAATAAAGTCATACATAAGAGAATTTATTTGCATTCATATAA
AACTATACTCATTGGCTTGGGGAGCAGGGTTTTATGTATATAGTACTGTC
TAGTTTTCTGTCAACTTGCCAAAAGGTCTAGTCATAAGAGAAGAGGGAGC
CTCAATTCAGAAAATGCCTCCATAAGATCAAGCTGCAGGCGAGCCTGTAN
GACATTTCTTAGTTAATGGGGGAGGGCCCAGGCCATTGTGGGT

NTTTTTCCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCCTGTCTAAAGGAAAT
GCAGTGACAAAGAATGGAGCAGAGACTGAAGCAAAGGCCATCCAGAAACT
GCCTCACCTAGGGATCCATCCCATCTGCTGACAACAAACCCAGACACCTG
ATGCCAAGAAGTGCTTACTGACAGGAGCATGATATAACTGTCCCCTGAGA
GGCTCTGCCAGAGCTTGACCAATACAGATGTGGATGCATGCAGCCAAACA
TCGGACTGAGCATGGGACCCCAACAGAGGAGTTAAGGCAAGGACTGAAGG
AGCTGAAGGGGTTTGCAACCCCATAGGAAGAACAACAATATCAACCAACC
AGACCCCTCCCCCAAAAGCTCCCAGGGACTAAGCCATAAACCAAAGAGTA
CACATGGGCATGGCTCCAGGCATATGTAGCAAAGGACTGCCTTATTGGGC
ATCAATGGGAGGGGAGGCCCTTGGTCCTGTGGAGGCTTGATGCCCCAGGG
TAGGGAAATACTAGGGTGCTGATGAAGGAGTAGGTGGGCTGGGTGGCTGA
GGGAGCACCCTCATAGAGGCAGGGGAAGCAGGAGAGGATAGGAGGTTTGG
GGAGGAGAAACTGAGAAGGGGGAATAACATTTGAAATGTCAATAAATGAA
ATAATCAATAAAAATAAATGAAAATAAATAATTTGCTAAGAAATAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no532_f24.b1 MSMg01no532_f24.b1 CHROMAT_FILE:
MSMg01no532_f24.b1 PHD_FILE: MSMg01no532_f24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:17 2005
         (658 letters)



>mm_chrX_6753001_6754058
          Length = 1058

 Score = 1038 bits (537), Expect = 0.0
 Identities = 552/562 (98%), Gaps = 8/562 (1%)
 Strand = Plus / Minus

                                                                        
Query: 97   tgtgtgctaggtaatccgagctctaatagtgaaccacatccccttcttatatattttaaa 156
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1058 tgtgtgctaggtaatccgagctctaatagtgaaccacatccccttcttatatattttaaa 999

                                                                        
Query: 157  aagaagtagaaggagttagaaggttttgaagaaagaaatatgaaatatttaagtaagtaa 216
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 998  aagaagtagaaggagttagaaggttttgaagaaagaaatatgaaatatttaagtaagtaa 939

                                                                        
Query: 217  aaatgctaatattatgatttaaagtctataccttatataaacaagtatcaaagcatcata 276
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 938  aaatgctaatattatgatttaaagtctataccttatataaacaagtatcaaagcatcata 879

                                                                        
Query: 277  ctatacttttaaaagcatacataatcataagtcaactaaaaataaattttaaataatttt 336
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 878  ctatacttttaaaagcatacataatcataagtcaactaaaaataaattttaaataatttt 819

                                                                        
Query: 337  accatccaccatgttcacaaaacatttgaggtggcatgtgcacacacacacacacacaca 396
            ||||||||||||||||||||||||||||||||||||||||        ||||||||||||
Sbjct: 818  accatccaccatgttcacaaaacatttgaggtggcatgtg--------cacacacacaca 767

                                                                        
Query: 397  cacacacacacacacacacacacacactgcagtaagtcaactgaaaaggataggaaaaat 456
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766  cacacacacacacacacacacacacactgcagtaagtcaactgaaaaggataggaaaaat 707

                                                                        
Query: 457  aataaagtcatacataagagaatttatttgcattcatataaaactatactcattggcttg 516
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706  aataaagtcatacataagagaatttatttgcattcatataaaactatactcattggcttg 647

                                                                        
Query: 517  gggagcagggttttatgtatatagtactgtctagttttctgtcaacttgccaaaaggtct 576
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646  gggagcagggttttatgtatatagtactgtctagttttctgtcaacttgccaaaaggtct 587

                                                                        
Query: 577  agtcataagagaagagggagcctcaattcagaaaatgcctccataagatcaagctgcagg 636
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586  agtcatcagagaagagggagcctcaattcagaaaatgcctccataagatcaagctgcagg 527

                                  
Query: 637  cgagcctgtangacatttctta 658
            |||||||||| |||||||||||
Sbjct: 526  cgagcctgtaggacatttctta 505


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 49
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1058
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1048
Effective search space:   679104
Effective search space used:   679104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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