NNNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCAAAAGGTATCCGTTAAAATAAAATAAAACAATAACAAAA
AGCAATCTGACTTTCTCCAGCCCCTCTATGGTCCAGTAGCCTCCTTGGCT
ATTTAACACCAACAAACCACTAGTAAACACTAGTGTTGGGCAGATTTGTG
TGTTGCTGTAAAGCTGCCTTGATCATTTGCTTTCTTGGGTGTTATCCTTC
ATGAAGTTATTTCTCTCTTTTCCTTCTCTGTAAAATATATAAAACTAAGC
TTAAAAGCATTTTCTGAAGTGATACATGAGTCCCACCCTCTCTATATAAG
ATCTGGTTACCATGAGTCAGCCAAAATAAACTCCGCCTGACATTCTTAGG
TATGATTCTGAAAGAGGTGTTTTCTGTTGTCACTGGGGTGTCACTTAGTT
CCCCATTCACTAGCAGCACCTAGAACATGGCACTAGGGTACAAAGGCCAG
TGGAAGTCCTCCTCTCTCAACTCATGGATGTATTTTCATAAAAAGATATT
AATACCAGCATCTATTCCACCTCTAGAGAACATGAATGCTAGCCTAGGCT
CCTATACCTAACAAAACTCTCAATCACCATAGACGGAGAAAACAATATAT
TCCACGACAAAGCCAATTTTACACATAATCTTTCCTTAAATCCACCCCTA
CAAAGAATAATAGGTGAAAAACAACAACACAAGGAGTGAAACTACC

NGGGGCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAAGAAAGACCAGTGGTG
TGGGTAGCAGCAAAGTTCTTGAGTCTCAAAGACAACAGATACCATGGCTG
AATATTCCAACTACAACAACTAGGTAACATTGGTTCTACACTTAGCATGC
CGTTTCTAGAAAAAAAAAATTAAAGAATTAAGCAATGTTTCCTCTGAACC
TGACATGTTACTATCACAAATGAAAGAAGGATCCATGATCACATGAATAT
GAAAGGGGCATGAAGCAGCACAATTGTTCAAATTATTGGCAGCTAGTCAG
CATTAACACAAGAAGGGACCAAAGACAATAAACAGCTTTGAAGACATGTC
CAAATGACCGCGTTCATTTACAAGTTTCTTACCCATTCCTTGTATATCCA
TTGATTGATTAACTCATTGATTAAAGCCCTCAGGTTCCAATCACTTTTCA
GAGTGCATATTGTACTACCTATGAACATTGTACTGTGGACCAAAGCCTTC
ATCTAAGACCCATGACTGACATTTCAAAACAATTTAACCACAGAATTCTT
TATTTGAAACAAAGTGATAAGATCCATCTATCTCTTCAAGGATATCTCTG
TTTTGTTCAAAAAGGAGAAAAATGCAATCCAAGTTCAAGATCTTGATCCC
TTATCCATGCATCTTAAACCCATAGGGGCTAGCCAGAATGTAAGGTCAGA

Query= MSMg01no532_h12.b1 MSMg01no532_h12.b1 CHROMAT_FILE:
MSMg01no532_h12.b1 PHD_FILE: MSMg01no532_h12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:24 2005
         (662 letters)



>mm_chrX_53200192_53201255
          Length = 1064

 Score =  677 bits (350), Expect = 0.0
 Identities = 576/656 (87%), Gaps = 25/656 (3%)
 Strand = Plus / Minus

                                                                       
Query: 22  gttaaaataaaataaaacaataacaaaaagcaatctgactttctccagcccctctatggt 81
           ||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||| |||
Sbjct: 696 gttaagataaaataaaagaataacaaaaagcaatctgactttctccagctcctctacggt 637

                                                                       
Query: 82  ccagtagcctccttggctatttaa--caccaacaaaccactagtaaacactagtgttggg 139
           ||||| || |||||||||| ||||  ||   ||||| ||| || ||| ||||||||||||
Sbjct: 636 ccagttgcttccttggctacttaatgca--gacaaatcacaagaaaatactagtgttggg 579

                                                                       
Query: 140 cagatttgtgtgttgctgtaaagctgccttgatcatttgcttt--cttgggtgttatcct 197
           || ||| |||||||||| |||||||| |||||||||||  |||  |||||||| ||||||
Sbjct: 578 cacattggtgtgttgctctaaagctgtcttgatcattt--ttttccttgggtgctatcct 521

                                                                       
Query: 198 tcatgaagttatttctctcttttccttctctgtaaaatatataaa--act-aagcttaaa 254
           ||||||||| ||||||||||||||||||||||||||  | |||||  ||| || | ||||
Sbjct: 520 tcatgaagtgatttctctcttttccttctctgtaaa--agataaagcactgaa-cctaaa 464

                                                                       
Query: 255 agcattttctgaagtgatacatgagtcccaccctctctatataagatctggttaccatga 314
           ||||||||||| || ||||||||||| ||||||||||| |||||||||  ||||||||||
Sbjct: 463 agcattttctggagagatacatgagttccaccctctctctataagatccagttaccatga 404

                                                                       
Query: 315 gtcagccaaaataaactccgcctgacattcttaggtat-gattctgaaag-aggtgtttt 372
           | |||||||||||||||| |||||| |||||||||| | ||||||||||| ||||| |||
Sbjct: 403 gacagccaaaataaactctgcctgagattcttaggt-tggattctgaaagcaggtggttt 345

                                                                       
Query: 373 ctgttgtcactggg-gtgtcacttagttccccattcactagcagcacctagaacatggca 431
           |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 344 ctgttgtcactgggagtgtcacttagttctccattcactagcagcacctagaacatggca 285

                                                                       
Query: 432 ctagggtacaaaggccagtggaagtcctcctctctcaactcatggatgtattttcataaa 491
           ||||| |||| |||| |||||||| |||| ||||||||||||||||||| |||| | |||
Sbjct: 284 ctaggttacacaggcgagtggaaggcctcatctctcaactcatggatgtgtttttaaaaa 225

                                                                       
Query: 492 aag-atattaataccagcatctat--tccacctctagagaacatgaatgctagcctaggc 548
           ||| ||| || | ||| ||||||   || ||||||||||||||| ||||| |||| | ||
Sbjct: 224 aaggatactagttccaacatctagactctacctctagagaacataaatgccagcccaagc 165

                                                                       
Query: 549 tcctatacct-aacaaaactctcaatcaccatagacggagaaaacaatatattccacgac 607
           |||||||| | |||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct: 164 tcctatac-tgaacaaaactctcaatcaccatagatggagaaaacaatatattccatgac 106

                                                                   
Query: 608 aaagccaattttacacataatctttccttaaatcc-acccctacaaagaataatag 662
           ||| ||||||||||||||||||||||| |||| || |||| ||||||| |||||||
Sbjct: 105 aaaaccaattttacacataatctttccataaagcccaccc-tacaaaggataatag 51


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1064
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1054
Effective search space:   687208
Effective search space used:   687208
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)