BAC Information

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BAC

Clone NameMSMg01-533G16
ChromosomeX (Build37)
Map Location 53,512,414 - 53,512,621
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC626274, LOC625210, LOC100039055, LOC100039066, LOC676623, EG626315, LOC666268, LOC666097, LOC666107, LOC626348, LOC100039146, LOC100039160, EG630825, LOC100039187, LOC673263, 3830403N18Rik, LOC626439, Gm773, LOC100039254
Downstream geneLOC100039266, LOC100039276, 1600025M17Rik, Zfp449, LOC100039317, 6330419J24Rik, 6530403M18Rik, LOC100039346, Ddx26b, Gm648, Tmem32, Slc9a6, LOC100039342, Fhl1, Mtap7d3, Gpr112, Brs3, Htatsf1, Vgll1, Cd40lg, Arhgef6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-533G16.T7 (MSMg01no533_g16.b1)MSMg01-533G16.TJ (MSMg01no533_g16.g1)
ACCAG601344AG601345
length710753
length of high quality
(start - end)
421 (228 - 648)668 (76 - 743)
definitionCHROMAT_FILE: MSMg01no533_g16.b1 PHD_FILE: MSMg01no533_g16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:10:37 2005CHROMAT_FILE: MSMg01no533_g16.g1 PHD_FILE: MSMg01no533_g16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:10:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCTTTTAAGTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGGATTTCTGTATATGTTACTTGACCATTTTACCTACTGCTTTTATA
TTCTTTCTTTGTTTTGTTCATTTTGGGGCTTTGATTAATATATGATGGCA
GGGATTTTTGTTTTTGTTGTTGTTTTTCTGGTCCAAACTATTTGGAGTTC
TGCATGCTTCTTGTATGTTCATGGACATCTCTTTCATTAGGTTAGGAAAG
GTTTCTTTTATAGTTTTGTTGAAGATATTCACTGGCCCTATAATTTGGAA
ATCTTACTTCTCATCTATACCTGTTATCCTTATGTTTTTTCTTCTCCTTG
TGTCCTAGATTTCCTGGATGTACTTAATTTTACTTAATTTTTAAAATCTG
TTTCAAAAACTCAAAATGGGCAGTTTTTCCAAAGAAATTCAAATTGATAG
TACTTTATTAACTATTACTAATATTGCATACTTTCAAATGTTTACATTTT
CTATTGTCAATACAGTAAATAATCCAGCAATTGGTAAAGATGAAAATATA
TCGCCTCAAGTAAAAGGAGATGAAGACATGGGGTAATATTTTCAATTCTT
TTTCTTTTTTTCTCTTTTTTTTTTCTTTCTTTTTTTTTTTTTTTGCCAGT
TCAATAGAGTACTTCAAAAGTAGTGTTTGTGTTACCTTCACTGGAAAACT
AGATTCAGGA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTGAATGCTTTAGCACCCCTTTTCT
TTGTTTAACTCTAATTTATCTCAGTAGTTTATATTTAAAAGCCATTTACT
GTCAGAATATCCACTCATTTCCTACAATAGGGGGTAACTTGTATTCTGGA
TAATTCTGTATTCACTGTGCTTTTCTGAATTTCCAGTTGGTCTTTTTACA
TCTTTGAAAACATTAAATTTAAGTACCAGAATAATCCTTCTAGGCATGAA
GAACTTGCTGCATGGTAAAATGGGTAGGAAATTATAAGTATCAATTCAGA
TAATATATACCTTTTGAGAATTAGCTTCACATTTCTAATGTCCGAACAAA
ATAGCTTTCTTAATTTAAGTTACAGTTGCTATGTTTCACTCAGATAATCT
ATAAAGGCAAAATGAGTAGTGGTTTATAAATGAAGAAATGTCTGCATTAA
GCATGGTAATATTGAAAAGAAATTACAATTTTTCAATTTGAAATTAAATC
TCTGAAGATGATAACTTAACTTGTGTTTGGAAAAGATTTCTGTGAATTTT
TAAAAATATTATTAATATCAGCAGTATAAAGTTGTTCAAACAAAATGACT
TTTATTCATTGTAAATTTAATAACGAAAATAACTGAATAGTAGGTTTGTA
GCATTTGACACAGTAATTAATATTCTTTAATAAAGCTTTTAAATTCTGTT
CAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no533_g16.b1 MSMg01no533_g16.b1 CHROMAT_FILE:
MSMg01no533_g16.b1 PHD_FILE: MSMg01no533_g16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:37 2005
         (421 letters)



>mm_chrX_53512040_53512860
          Length = 821

 Score =  190 bits (98), Expect = 2e-52
 Identities = 183/212 (86%), Gaps = 8/212 (3%)
 Strand = Plus / Minus

                                                                       
Query: 160 atttttaaaatctgtttcaaaaactcaaaatgggcagtttttcca-aagaaattcaaatt 218
           |||| ||||| ||| ||||||||||| | ||||||| |||||||| || |||| ||||||
Sbjct: 582 atttctaaaagctgcttcaaaaactc-acatgggcattttttccagaa-aaatgcaaatt 525

                                                                       
Query: 219 gatagtactttattaactattactaatattgcatactttcaaatgtttacattttctatt 278
           |||||||||||||||||||||||| |||| |||||||||||||| ||| |||||||||||
Sbjct: 524 gatagtactttattaactattactgatatagcatactttcaaatatttccattttctatt 465

                                                                       
Query: 279 gtcaatacagtaaataatcc-agcaattggta-aag-atgaaaatatatcgcctcaagta 335
           |||||||||||||| |  || |||| |||  | ||| || | ||||||| |||||| |||
Sbjct: 464 gtcaatacagtaaagagccccagcatttg--acaaggattagaatatattgcctcatgta 407

                                           
Query: 336 aaaggagatgaagacatggggtaatattttca 367
            ||| ||||||||| |||||||||||||||||
Sbjct: 406 gaagcagatgaagatatggggtaatattttca 375


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 821
Length adjustment: 9
Effective length of query: 412
Effective length of database: 812
Effective search space:   334544
Effective search space used:   334544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)