TCGGCGTTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCACAATGGGCTAAGTCGTAAAGATCACTTCTAGGCCA
TGCTTTCAGTGATGTTCCACAAAGGCTCAGTTAGGTACTCAGTCCTAGGT
CTAACCCATGACAAAATAGATGTGCTTCTGGTTTTCCTCCATTCTTATGC
AACAGTCCATGAGAAAAACAATCTCATCTCAGAAGCGTATATATATTCTG
ACAGTTCTGAAAGTTTTTTTTTTTCCAATTTTGAGAGTCTTCATGAATTC
TAAGTTCTGTATTTTTTTTTTTTTTTTGAGAACTGCTCTTAAAACCCTTT
TTGGCTTTCTTTATTATCTGCTTGTTTGGTGACTAGTTCTGAACATATCT
TGATGAATTGTTGCTTTCCTGAAACATTTCAAGGAAAACATTTAGAGGAA
GATTCTTGGAATCTACCTCACATTCAATAAAATTCAGATACTCATACCTT
AACTAATCTACAATAGTAAATGTTCAGTCGTGTGCATTGGGAATGAGATT
AATATGCAGCTCCTTTCCAGAGTATAGTTTACTGAAATATTTCAAACTCT
CACATTTGATCTTATCCCAAGTATCTGATCACTTTGAAATGAACTGTTCC
AGAATCATCCCTTCATTCAAATAAAAAGTGCTGATGATCAAAAACATTAA
CTGGGCAATTTTGGCCTGAAAGGACTCCACTGTTTG

TATTTCTCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTGAAAGATATTGTGTGAA
TTTGGTTTTTGTCATGGAATACTTTGGTTTCTCCATCTATGGTAATTGAG
AGTTTTGCTGGGTATAGTAGCCTGGGCTGTCATTTGTGTTCTTTTAGTGT
CCCGTACAACATCTGTCCAGGATCTTCTGGCTTTCATAGTCTCTGGTGAG
ACCAATGGAATAGAATTGAAGACCCAGAAATGAACCCACACACCTATGGT
CACATGATCATCGACAAGGGAGCTAAAACCATCCAGTGGGAGAAAGACAG
CATTTTCAACAAATGGTTCTGGAACAACTGGTTGTTATCATGTAGAAGAA
TGCGAATAGATCCATTCCTATCTCCTTAGGTCAAATCTAAGTGGATCAAG
GAACTTCACATAAAACCAGAGACACTGAAACTTATACAGGAGAAAGTGGG
GAAAAGCCTCCAAGATATGGGCACAGGGGAAAAATTCCTGAATAGAACAG
CAAAGGCTTGTGCTGTAAGATCGAGAATTGACAAATGGGACCTAATGAAA
CTCCAAAGTTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAGACC
ACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGAGAC
TAATATCCAATATATATAAAGAACTG

Query= MSMg01no533_l14.b1 MSMg01no533_l14.b1 CHROMAT_FILE:
MSMg01no533_l14.b1 PHD_FILE: MSMg01no533_l14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:00 2005
         (675 letters)



>mm_chrX_94357385_94358464
          Length = 1080

 Score = 1247 bits (645), Expect = 0.0
 Identities = 667/677 (98%), Gaps = 7/677 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattca-caatgggctaagtcgtaaagatcacttctaggccatgctttcagtgatgttc 63
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaccaatgggctaagtcgtaaagatcacttctaggccatgctttcagtgatgttc 264

                                                                       
Query: 64  cacaaaggctcagttaggtactcagtcctaggtctaacccatgacaaaatagatgtgctt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cacaaaggctcagttaggtactcagtcctaggtctaacccatgacaaaatagatgtgctt 324

                                                                       
Query: 124 ctggttttcctccattcttatgcaacagtccatgagaaaaacaatctcatctcagaagcg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctggttttcctccattcttatgcaacagtccatgagaaaaacaatctcatctcagaagcg 384

                                                                       
Query: 184 tatatatattctgacagttctgaaagtttttttttttccaattttgagagtcttcatgaa 243
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 385 tatatatattctgacagttctgaaag-ttttttttttccaattttgagagtcttcatgaa 443

                                                                       
Query: 244 ttctaagttctgtatttttttttttttttt-----gagaactgctcttaaaacccttttt 298
           ||||||||||||||||||||||||||||||     |||||||||||||||||||||||||
Sbjct: 444 ttctaagttctgtatttttttttttttttttttttgagaactgctcttaaaacccttttt 503

                                                                       
Query: 299 ggctttctttattatctgcttgtttggtgactagttctgaacatatcttgatgaattgtt 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ggctttctttattatctgcttgtttggtgactagttctgaacatatcttgatgaattgtt 563

                                                                       
Query: 359 gctttcctgaaacatttcaaggaaaacatttagaggaagattcttggaatctacctcaca 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gctttcctgaaacatttcaaggaaaacatttagaggaagattcttggaatctacctcaca 623

                                                                       
Query: 419 ttcaataaaattcagatactcataccttaactaatctacaatagtaaatgttcagtcgtg 478
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 624 ttcaataaaattcagatactcataccttaactaatccacaatagtaaatgttcagtcgtg 683

                                                                       
Query: 479 tgcattgggaatgagattaatatgcagctcctttccagagtatagtttactgaaatattt 538
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tgcattggaaatgagattaatatgcagctcctttccagagtatagtttactgaaatattt 743

                                                                       
Query: 539 caaactctcacatttgatcttatcccaagtatctgatcactttgaaatgaactgttccag 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 caaactctcacatttgatcttatcccaagtatctgatcactttgaaatgaactgttccag 803

                                                                       
Query: 599 aatcatcccttcattcaaataaaaagtgctgatgatcaaaaacattaactgggcaatttt 658
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 aatgatcccttcattcaaataaaaagtgctgatgatcaaaaacattaactgggcaatttt 863

                            
Query: 659 ggcctgaaaggactcca 675
           |||||||||||||||||
Sbjct: 864 ggcctgaaaggactcca 880


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1080
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1070
Effective search space:   711550
Effective search space used:   711550
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)