TTCGCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCACTTCAAGGCCCATGCTTACGGAAAAACATATATTTTAGAA
CTTTGATAACTGTCTGCCCTTCGTTTCATTTTAGCTAATCTATATGCTAT
AGCAGTTAAAATATTGTAGATCACAATAAAAATATGTATTAATGAAAACA
GATGAATATACATATGTACATACATATATAATTTTATGGCAAGTGTGTTA
CATGAGACATCTGTAAGAAAGATGGAATCCAGTATGTTAAAAATTGCAAT
CTTAGAACATTTTAGATATTTCTTATACTTTCATAAATCATCAACTACTA
CTACAATGTAAGAATGTGAAATGTTAAAGTATGAAAACTGAATTTCAGTC
ATTTTCTATTCAAAGTAACAACTGAGAATCTTTTTTTGAATATTTCTTAT
TAGATATTTTCTTTATATACCTTTCAAATGCTATCCCAAAAGTTCCCTAT
ACCCTCCCCTCCCCACCGACAACTGAGAATCTTAAATGATTCGCTCATGT
TTAACTCTTATTCTTTTAATCATTATACTTATAAAACTTACCAGTTGATA
TTTAAACAATTTCCATAATTAAGTATGAGGCCACTAAATGACCAAATAAT
ATATAGGTTAAAGTAGGATTTCCATCACTACTGGGCAGTTTCCTTATGTA
TGCACTAAGTGGCTCATGCAGTACCATCATGTGGTACTTGTTAGAGAG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTTGTTTAGCTGTATACCCCATTTTTAATGGGGT
TATTTGAATTTCTGGAGTCCTGGTTCTTGAGCTCTTTGTATATATTGGAT
ATTAGTCCCTTATCAGATTTAGGGTTTGTAAAAATCCTTTTCCAATCTGT
TGGTTGACTTTTTGTCTTATTGACAGTATCGTTTGCCTTACAGAAGCTTT
GCAATTTTATGAGATCTCATTTGTCGATTCTTGACCTTACAGCACAAGCC
ATTGCTGTTCTGTTTAGGAATTTTTCCTCTGTGCCCATATATTCGAGGCT
TTTCTGTACTTTCTACTCTATAAGTTTCAATGTCTCTGGTTTTATGTGGA
GTTCTTTAATCCACTTAGATTTGTCCTTAGTACAAGAAGATAGGAATGGA
TCAATTCGAATTCTTCTACATGATAACCACCAATTGTGCCAGCACCATTT
GTTGAAAATGCTTTCTTTTTTTTACTGGATGTTTTTAGCTCCCTTATCAA
AGATCAAGTGACCATAGGTGTGTGGGTTCAATTCTGGGTCTTTAATTCTA
TTCCAGTAATCTACCTGTCTGTCCCTGTACAAGTACCATGCAGTTTTTAT
CACAATTGCCCTGTAGTACAGCTTGAGGTCAGGTATGGTGATTCCCCCAG
AAGTTCTTTTATTGTTGAGAATAGTTTTTCCTATCC

Query= MSMg01no536_n02.b1 MSMg01no536_n02.b1 CHROMAT_FILE:
MSMg01no536_n02.b1 PHD_FILE: MSMg01no536_n02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:02 2005
         (585 letters)



>mm_chrX_80159956_80160940
          Length = 985

 Score = 1035 bits (535), Expect = 0.0
 Identities = 568/579 (98%), Gaps = 1/579 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacttcaaggcccatgcttacggaaaaacatatattttagaactttgataactgt 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 gaattcacttcaaggcctatgcttacggaaaaacatatattttagaactttgataactgt 522

                                                                       
Query: 65  ctgcccttcgtttcattttagctaatctatatgctatagcagttaaaatattgtagatca 124
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 521 ctgcccttcgtttcattttagcgaatctatatgctatagcagttaaaatattgtagatca 462

                                                                       
Query: 125 caataaaaatatgtattaatgaaaacagatgaatatacatatgtacatacatatataatt 184
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 caataaaaatatgtattcatgaaaacagatgaatatacatatgtacatacatatataatt 402

                                                                       
Query: 185 ttatggcaagtgtgttacatgagacatctgtaagaaagatggaatccagtatgttaaaaa 244
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 401 ttatggcaagtgtgttacatgagacatctataagaaagatggaatccagtatgttaaaaa 342

                                                                       
Query: 245 ttgcaatcttagaacattttagatatttcttatactttcataaatcatcaactactacta 304
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 341 ttgcaatcttagaacattttagatttttcttatactttcataaatcatcaactactacta 282

                                                                       
Query: 305 caatgtaagaatgtgaaatgttaaagtatgaaaactgaatttcagtcattttctattcaa 364
           ||||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||
Sbjct: 281 caatgtaagaatgtgaaatattaaggtatgaaaactgaatttcagtcattttctactcaa 222

                                                                       
Query: 365 agtaacaactgagaatc-tttttttgaatatttcttattagatattttctttatatacct 423
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 agtaacaactgagaatcttttttttgaatatttcttattagatattttctttatatacct 162

                                                                       
Query: 424 ttcaaatgctatcccaaaagttccctataccctcccctccccaccgacaactgagaatct 483
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 161 ttcaaatgctatcccaaaagttccctataccctcccctccccactgacaactgagaatct 102

                                                                       
Query: 484 taaatgattcgctcatgtttaactcttattcttttaatcattatacttataaaacttacc 543
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 101 taaatgatttgctcatgtttaactcttattcttttaatcattatacttataaaacttacc 42

                                                  
Query: 544 agttgatatttaaacaatttccataattaagtatgaggc 582
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 41  agttgatatttaaacaatttccataattaagtatgaggc 3


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 985
Length adjustment: 10
Effective length of query: 575
Effective length of database: 975
Effective search space:   560625
Effective search space used:   560625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)