TTTCTTTTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCAGTCCATTGATATTAAGAGATATTAAGAAAAATAATTGT
TGTTTCCTATTATTTTTGGTTTTAGAGTTGGCATTCTGTTTTTGTGGCTG
TCTTCTTTTTGGTTTATTGAGGGATTACTTTCTTCCTTTTTCTAGGGTGT
GGTCTCTGTCCTTGTATTGGTTTTGTTCTGTTATTATCCTTTGAAGGGCT
GAATTCGTGGAAAGATAATGTGTGAAATTGGTTTTGTTGTGGAAAACTTT
GGTTTCTCCTTCTATGGTAATTGAGAGTTTGGCTGGGTGTAGTAGCCTGG
GATGGCATTTGTGTTCTCTTAGTGTCTGTATAACATCTGTCCAGGCTCTT
CTGGCTTTCATAGTCTCTGGCGAAAAGTCTGGTGAAATTCTGATAGGCCT
GCCTTCATATGTTATTTAACCTTTTTTCCTTACTGTTTTTAATATTCTAT
CTTTATTTAGTGCATTTGTTTTTCTGACTATTATGTGTCGGGAGGAATTT
CTTTTCTGGCCCAGTTATTTGGAGTCTTGTAGGCTTCTTGTATGTTCTTG
GGCATCTCTTTCTTTATGTTTGGGAATGCCCCTTCTTCAACTTCGTTGAA
CATACTCGTGGGGCCCTTAAATTTAAATACCCTTATTTTTATCATTCCTC
TTATCATTTTGTCCCGTTTTTTGCCTTTATGTTCAGCCATTTTCTCGCCT
ATTTGACCTTATTGTTTTCTTCCCATG

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCTAAAAGTTTCAAGAAACTATGATTAAATCAGCA
TGAAGGGGGGCCAGTTATTTGGCCACTGTCTGGATAACATCAACATTGTG
TGACATCTCATGACTGTGAGAAAATAGTTGAGAAACCAAGGGAGAAAGGA
TTATTTTTTAAGTTTCATTTCACTTGATATCAGTTCATAATGATAGGCAA
TCATATGACTCATCTTCTCACTGGAATATGTTCACATTTATCTCATCTCA
GAATCCAAACACCAAATACATAATGTACGAAATATCATCAAGTTTCTGGT
TCCCCAGTATTTTTCTGGTAACCTGAACAATTGTTCACAGCATTTCCATA
TAAGACTAAATTATAAATTGCTACAGGACAATTTTCTTTCTGTCACATTA
TATAAAAGCCATGGAATAAAGATTTACATTTAAGGTGGAAATGAAACACA
TTTCCAAGAAGTCCTATGGTTTAAATGCTAGTGTGCAAAAGGGTGGTGAA
TGTGTTTATATATCCACACAATTTTGCATTTTTTGTAAGAGTTTTTATTT
AAAGAGGTCTAAAGGCTTATGGAAGGGAAGGGAAGGGAGAGTAAGGGAAA
GGGAAAGGTAACTCCCCCTCCTTTCTCTTCTTTTCTTTTTACCGTTAACG
TATTTCTCTTTCTTTTTTCCCTCTTTCTACGCCCCCCTATCCTCTCCCTC
ACCTTTCTTTATTTCT

Query= MSMg01no536_n06.g1 MSMg01no536_n06.g1 CHROMAT_FILE:
MSMg01no536_n06.g1 PHD_FILE: MSMg01no536_n06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:03 2005
         (538 letters)



>mm_chrX_88508318_88509254
          Length = 937

 Score =  690 bits (357), Expect = 0.0
 Identities = 495/553 (89%), Gaps = 25/553 (4%)
 Strand = Plus / Plus

                                                                       
Query: 7   gtttcaagaaactatgattaaatcagcatgaaggggggccagttatttggccactgtctg 66
           ||||||||||  |||||| ||||||||||||||||||||||||| |||||||| ||||  
Sbjct: 189 gtttcaagaag-tatgatgaaatcagcatgaaggggggccagttttttggccagtgtcca 247

                                                                       
Query: 67  gataacatcaacattgtgtgacatctca-tgactgtgagaaaatagttgagaaaccaagg 125
           |||||||||||||||||||||||| | | | ||||||||| ||||| |||||||||| ||
Sbjct: 248 gataacatcaacattgtgtgacatgt-agttactgtgagagaatagctgagaaaccatgg 306

                                                                       
Query: 126 gagaaaggattatt-------------------ttttaagtttcatttcacttgatatca 166
           ||||||| ||| ||                   |||||||||||||||||||||||||||
Sbjct: 307 gagaaagaattgttgttggttttttttttttttttttaagtttcatttcacttgatatca 366

                                                                       
Query: 167 gttcataatgata-ggcaatcatatgactcatcttctcactggaatatgttcacatttat 225
           |||||||||| || || || |||||||||||| ||| |||||||||||||||||||||||
Sbjct: 367 gttcataatggtaagg-aaccatatgactcattttcccactggaatatgttcacatttat 425

                                                                       
Query: 226 ctcatctcagaatccaaacaccaaatacataatgtacgaaatatcatcaagtttctggtt 285
           |||||||||||||||||| ||||||| |||||||||| ||||||||||||||||||||||
Sbjct: 426 ctcatctcagaatccaaaaaccaaatgcataatgtaccaaatatcatcaagtttctggtt 485

                                                                       
Query: 286 ccccagtatttttctggtaacctgaacaattgttcacagcatttccatataagactaaat 345
           |||||||||||||||||||||| |||||||| |||| ||||||| |||||||||||||||
Sbjct: 486 ccccagtatttttctggtaacccgaacaattattcagagcattttcatataagactaaat 545

                                                                       
Query: 346 tataaattgctacaggacaattttctttctgtcacattatataaaagccatggaataaag 405
           |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 546 tataaactgctacaggacaatttt-tttctgtcacattatataaaagccatggaataaag 604

                                                                       
Query: 406 atttacatttaaggtggaaatgaaacacatttccaagaagtcctatggtttaaatgctag 465
            |||| ||||||||||||||||||||||||||||||| |||||||| ||| |||||||||
Sbjct: 605 ttttatatttaaggtggaaatgaaacacatttccaaggagtcctattgttcaaatgctag 664

                                                                       
Query: 466 tgtgcaaaagggtggtgaatgtgtttatatatccacacaattttgcattttttgtaagag 525
           ||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 665 tgtgcaaaagggtagtgaaagtgtttatatatccacacaattttgcattctttgtaagag 724

                        
Query: 526 tttttatttaaag 538
           |||||||||||||
Sbjct: 725 tttttatttaaag 737


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 937
Length adjustment: 10
Effective length of query: 528
Effective length of database: 927
Effective search space:   489456
Effective search space used:   489456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)