CATCAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTCAACTTTTCAATACAGAATGTACGAGAAGCAAAAAAATG
TTCAACATCCTTAATCATCAGAGAGAAACAAATCAAAACAACCTTGAGAT
TCCATCCACCTCACACCAGTTAGAATGGCTAAGATCAAAAATTCAGGTGA
CAGTAGATGCTGGCGGGGATGTGGAGAAAGAGGAACACTCCTGTATTATT
GGTGAGATTGCAAGCTGGTACAACCAAGTCTGGAAATCAGTGTGGTGGTT
CCACAGAAAATTGAACATAGTAATACAGGAAGATCCAGCAATACCTCTCC
TGGGCATATACCCAGAAGATGTTCCAACTTGTAATAAGGACACATGCTCC
ACTATGTTCATAGCAGCCTAATTTATAATAGCCAGAAGCTGGAATCTCTC
ACCTCCCAGGTCTCTGGTGCATTCTAGGGCATCCTTGAAACATCCTATTT
CCTGAGTTTGCCTATTTCCATTATTTCTGCTGGCCCTCAAGACTTCAGTC
TTTTTCCCTTATTCAACACCAGATCAGAATCGATCCCCACTCTACCACTT
TCCACTTTCCCTCCCATGTTCTTCTTTCCCTTCCAACTTGTGGTTGCTTT
CTTCTCCCTCCCAATTATGATCGAGGCATCTTCACTTGAGTACTTCAGCT
TGTTGAGCTCTTTGAGTTCTGTGGACTGTACCCTGTGTATTCTGTAATTT
TTGTTGTTTGTTTG

CCCCATCATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTACTCAAAGTCATTGGAGAC
AACAGCAAATCTGTTTTGTCCGAATGGAGAATGGATGAGGATTTGTGCTC
CATTAAAAAGGTCAATAAATTGACTAATTTGATTCCTGCCTGTATATTTG
TGTGTGCTTTGTACTTTTTTCTGCTTTGTGTTGTGCTCTGTGTTCTTGAT
TATTACCTCTAGGGTCCTTACCATACTTGCAAAATGAAACATTTCTCAGT
TGGAAAAGCTCTCATTTTTTTCCTCTGTATACAATATGATTCTTTAAAAA
ATAAGTTTTTGATTCCTTTGTACTAATAGTAAGATCAAAATTTCTGGGAA
GACACTTTTCATTGAAAATACAGTTTTTCATTCAATAGATTCAGATTACT
GTCCCCCCAAATCCTTCTACAACCTCTCCACTTCTCGACCCACCCAAATT
CACACTTTTTCTTTCTCCCTTTATTAAAATACAAACAGGCATCTAAATAA
TAATGATACTATTAATGATACTAATGACAATTATAATGAAGAATAAGATA
CAAAATAAACAAATGAACCAGAACAGAACAAAGCAAACATAATGAAAAAG
AGGCTAAGAANAAGCACAAGAAATATACATGTAGACACAGAGACATATAT
GTTCACAAACACTCAGAAATCCCATAAAAACAAAAAAGACTGCTAACCAT
AATATTTAAACAAAAGGCCCCTTAAGT

Query= MSMg01no536_p03.g1 MSMg01no536_p03.g1 CHROMAT_FILE:
MSMg01no536_p03.g1 PHD_FILE: MSMg01no536_p03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:12 2005
         (577 letters)



>mm_chrX_53358124_53359097
          Length = 974

 Score =  373 bits (193), Expect = e-107
 Identities = 419/501 (83%), Gaps = 21/501 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctactcaaagtcattggagacaacagcaaatctgttttgtccgaatggagaatggatgag 60
           |||| ||||||| |||||||||||||  | || | ||||| | ||||||||||||  |||
Sbjct: 494 ctacccaaagtctttggagacaacagggattccg-tttgttctaatggagaatgggggag 436

                                                                       
Query: 61  gatttgtgctccattaaaaaggtcaataaattgactaatttgattcctgcctgtatattt 120
            ||| |||||||||||||||||||  || ||| |||| |||||| |||| |||| |||||
Sbjct: 435 tattagtgctccattaaaaaggtccttacattcactagtttgatgcctgtctgtctattt 376

                                                                       
Query: 121 gtgtgtgctttgtacttttttctgctttgtgttgtgctctgtgttcttgattattacctc 180
           | ||||||| ||||||||| |||||| ||||||||| |||||||| |||  || || |||
Sbjct: 375 gagtgtgctatgtacttttgtctgctgtgtgttgtgttctgtgttattggctactaactc 316

                                                                       
Query: 181 tagggtccttaccatacttgcaaaatgaaacatttctcagttggaaaagctctcattttt 240
           || |||||||||||||||||||||||||||     ||||||| ||||| || |||| || 
Sbjct: 315 tacggtccttaccatacttgcaaaatgaaa-----ctcagtttgaaaatctttcatattc 261

                                                                       
Query: 241 ttcctctgtatacaatatgattcttt-aaaaaata--agtttttgattcctttgtactaa 297
            ||||||||||||||||||||||||| ||||||||  ||||| |||  |||||||||   
Sbjct: 260 gtcctctgtatacaatatgattctttaaaaaaatatcagtttatgagacctttgtac--- 204

                                                                       
Query: 298 tagtaagatcaaaatttctgggaagacacttttcattgaaaatacagt-ttttcattcaa 356
              ||| ||| | |||| | |||||| |||||| |||||||||||| | |||||||||| 
Sbjct: 203 ---taacatctacattt-ttggaagatacttttaattgaaaataca-tcttttcattcag 149

                                                                       
Query: 357 tagattcagattactgtccccccaaatccttctacaacctctccacttctcgacccaccc 416
           || |||| |||||| |||||||||| |||||||| | |||||||||||||| ||||||||
Sbjct: 148 tacattctgattacagtccccccaactccttctatatcctctccacttctctacccaccc 89

                                                                       
Query: 417 aaattcacactttttctttctccctttattaaaatacaaacaggcatctaaataataatg 476
           |||||||||| |||||||| |  |||||||| |||||||||||| ||||||||||| |||
Sbjct: 88  aaattcacac-ttttctttttttctttattagaatacaaacaggtatctaaataatgatg 30

                                
Query: 477 atac-tattaatgatactaat 496
           ||||  ||| |||||||||||
Sbjct: 29  atacaaatt-atgatactaat 10


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 974
Length adjustment: 10
Effective length of query: 567
Effective length of database: 964
Effective search space:   546588
Effective search space used:   546588
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)