BAC Information

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BAC

Clone NameMSMg01-537C24
ChromosomeX (Build37)
Map Location 162,765,382 - 162,765,963
singlet/doubletsinglet
Overlap geneGpm6b
Upstream geneLOC100040753, Gemin8
Downstream geneOfd1, Trappc2, Rab9, LOC100040795, A630018P17Rik, Egfl6, LOC100041912, LOC641660, LOC667791, EG667794, LOC100040850, LOC627268, Tmsb4x, Tlr8, Tlr7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-537C24.T7 (MSMg01no537_c24.b1)MSMg01-537C24.TJ (MSMg01no537_c24.g1)
ACCAG604218AG604219
length732997
length of high quality
(start - end)		612 (53 - 664)---
definitionCHROMAT_FILE: MSMg01no537_c24.b1 PHD_FILE: MSMg01no537_c24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:15:30 2005CHROMAT_FILE: MSMg01no537_c24.g1 PHD_FILE: MSMg01no537_c24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:15:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNTTAATTTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTTTAAAGGGCTCCAAGCCTTTAATGACAGCTCAAAACC
ACTAGGGAGTCATTAAATGGGTGGCTTTCTTTACCCGGCTCCAGTTGCTC
CTCTACTTAAAGGACAATTCCACCATAGTTCAGCTTGGGGAACCCCTGAG
TTTATTAGGCATCCTTACAGAGCATGTGTGACGGGTTACTTACAGGGACA
TTAGTAACCTCAAAGCAGCTGCACAACCAGAGAGTTTCAACTGAACATGG
AGACTTCCTCATTGCTGCATAATTGAGCTAGCTTTATATACACTAACGTG
TCCAGAGACCATGAGGAACACATATATTTAGAGCAAAGCACATACAAATG
GCTCAGAGGCGCATGAGGGAGAGGCTGGAGTCACACGTGAGGGTCTAATG
ATCTTCTGTACCCTCTCTATGGGACAGTGTCAATGGTTTTTGTCTGTTGC
TTGGTACGGAGTAGAGACAACTTAAACATCAAAAACCAAACCAGCCCCCC
CCCACCCCCCCCCAAAGAACATTGACAAACATTCAGATGCTGGCCCTTGG
GCTCCTACTTCTAGCTGAGATATGCCTGGAACAGCTACCAAGGGAAAGAC
AATTCTGCCCCACCCCCACTCATAGCTGTCTTCCCTGGTTGGACAACCTA
CTTTATTTTCCCTAGGGCCCATCTATGAATGN

TTGCCCCGCCCTTACGCTTTAATTCTATTTAGTTATCTTTATTGTTTTTT
CTATATTTCGTGGGCGCGNCCCCCATACTATAATAATTTTTTCCCCTCAA
TTTTATAAATGGGAGTTAAAGGCCCTTGGGGGGGGGACCCGGCCCCGTTG
GCCCCTGTTCTCCAAACAATTTTATAGGGGGGGGAAAACCCTTTATTAAA
AAAAGGGGGATTTTCCGCCCCGGGAAAAAATTTTCCTTTAAAGATTGGTG
AAAAGGTGGTTTAATCCCCTTAAAAAGAAAAAAAATAATATTTTTTTATA
AAAAAAATATTTTTCCTTGTGGTGGGGGGGGTGTATAAACCCCCAAAGAA
AAAAATTTTTTTTGTAAAAAAAACAAACAACAATTTTTTTCCCCCCCCCT
CTCTTGTTGTTTTTGGTATTTTTTTGTTTTTTTNCCCCCCCCCCACCAAA
AGAAAAAAAAAAGTATTGTTGTTGTTTACAAACAAAAAAACAACCCTTCT
CTGTGGTTGGTGAGAAGAAAAAAAAAAAAATAAAGAAAGAGAGGGGGGTG
GTGGGAGGAAAACCAAACACCCCCCTCGGGTGTGGTTGGGGGGGGGGGGG
GGGTGGGGGGGTGAGGGGGGTATATTTTTTATATTATTTATATTTTTCCT
TCTTCCCCGGGGGGGGGGGGGGGGGGGAGAGCCCAAAAAACAGAAACAAC
CACCAAACAACTATAATACGTNTATCTATTTTATTTATTTTTTATCTTGT
ATGTTTTCAAATGTAAGTGCGTGTGCGCGCTGCGTTTTTTCGTTTTCTCT
GTTTTTCTTTCNNNTTCNNNNNTCGAAAACAAAGAAAGACAACACATTAC
TAACATGACTAATACAACGAAAGAAACCACGACTCTTATATGCTCTCTTT
TCTCTTTCTTCTCACCTCTCTTCTTATCACTTCCCTCCTCTTTCTTAGTT
CGCTTCTCTACTGATGTATTAACATTGAAACCACCAATAGATAAGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no537_c24.b1 MSMg01no537_c24.b1 CHROMAT_FILE:
MSMg01no537_c24.b1 PHD_FILE: MSMg01no537_c24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:30 2005
         (612 letters)



>mm_chrX_162764952_162765963
          Length = 1012

 Score = 1083 bits (560), Expect = 0.0
 Identities = 577/584 (98%), Gaps = 4/584 (0%)
 Strand = Plus / Minus

                                                                        
Query: 31   taatgacagctcaaaaccactagggagtcattaaatgggtggctttctttacccggctcc 90
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1012 taatgacagctcaaaaccactagggagtcattaaatgggtggctttctttacccggctcc 953

                                                                        
Query: 91   agttgctcctctacttaaaggacaattccaccatagttcagcttggggaacccctgagtt 150
            ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 952  agttgctcagctacttaaaggacaattccaccatagttcagcttggggaacccctgagtt 893

                                                                        
Query: 151  tattaggcatccttacagagcatgtgtgacgggttacttacagggacattagtaacctca 210
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 892  tattaggcatccttacagagcatgtgtgacgggttacttacagggacattagtaacctca 833

                                                                        
Query: 211  aagcagctgcacaaccagagagtttcaactgaacatggagacttcctcattgctgcataa 270
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 832  aagcagctgcacaaccagagagtttcaactgaacatggagacttcctcattgctgcataa 773

                                                                        
Query: 271  ttgagctagctttatatacactaacgtgtccagagaccatgaggaacacatatatttaga 330
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772  ttgagctagctttatatacactaacgtgtccagagaccatgaggaacacatatatttaga 713

                                                                        
Query: 331  gcaaagcacatacaaatggctcagaggcgcatgagggagaggctggagtcacacgtgagg 390
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712  gcaaagcacatacaaatggctcagaggcgcatgagggagaggctggagtcacacgtgagg 653

                                                                        
Query: 391  gtctaatgatcttctgtaccctctctatgggacagtgtcaatggtttttgtctgttgctt 450
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652  gtctaatgatcttctgtaccctctctatgggacagtgtcaatggtttttgtctgttgctt 593

                                                                        
Query: 451  ggtacggagtagagacaacttaaacatcaaaaaccaaaccagcccc--cccccacccccc 508
            ||||| ||||||||||||||||||||||||||||||||||||||||  ||||||  ||||
Sbjct: 592  ggtacagagtagagacaacttaaacatcaaaaaccaaaccagcccccaccccca--cccc 535

                                                                        
Query: 509  cccaaagaacattgacaaacattcagatgctggcccttgggctcctacttctagctgaga 568
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534  cccaaagaacattgacaaacattcagatgctggcccttgggctcctacttctagctgaga 475

                                                        
Query: 569  tatgcctggaacagctaccaagggaaagacaattctgccccacc 612
            ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474  tatgcctggaacagctaccaagggaaagacaattctgccccacc 431


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1012
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1002
Effective search space:   603204
Effective search space used:   603204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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