BAC Information

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BAC

Clone NameMSMg01-539I05
ChromosomeX (Build37)
Map Location 70,841,665 - 70,946,194
singlet/doubletdoublet
Overlap geneDusp9, Pnck, Slc6a8, Bcap31
Upstream geneGabra3, Gabrq, Magea9, Cetn2, Nsdhl, Zfp185, Pnma5, LOC628237, Pnma3, Xlr4a, Xlr3a, Xlr5d, MGC106740, DXBay18, LOC627081, 4930408F14Rik, EG574437, Xlr4b, F8a, Xlr4c, Xlr3b, Xlr5c, EG434795, EG667187, LOC630169, Zfp275, Gm369, Zfp92, Trex2, Uchl5ip, Bgn, Atp2b3, LOC732481
Downstream geneAbcd1, Plxnb3, Srpk3, Idh3g, Ssr4, Pdzd4, L1cam, Avpr2, Arhgap4, Ard1, Renbp, Hcfc1, LOC100041206, LOC667264, Irak1, Mecp2, Opn1mw, LOC627455, Gm1538, LOC628388, Tktl1, Flna, Emd, LOC100041344, Rpl10, Snora70, Dnase1l1, Taz, B230340J04Rik, Atp6ap1, Gdi1, D0HXS9928E, Plxna3, Lage3, Ubl4, Slc10a3, 1810037C20Rik, G6pdx, Ikbkg, EG628456, LOC628465, LOC100041484, LOC674920, EG245472, Olfr1326-ps1, Olfr1325, EG434797, LOC385383, EG667379, LOC667382
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-539I05.T7 (MSMg01no539_i05.b1)MSMg01-539I05.TJ (MSMg01no539_i05.g1)
ACCAG605988AG605989
length746745
length of high quality
(start - end)		474 (52 - 525)419 (86 - 504)
definitionCHROMAT_FILE: MSMg01no539_i05.b1 PHD_FILE: MSMg01no539_i05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:18:29 2005CHROMAT_FILE: MSMg01no539_i05.g1 PHD_FILE: MSMg01no539_i05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:18:30 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,841,665 - 70,842,134)(70,945,776 - 70,946,194)
sequence
NGGTTTCTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCAAATTTACTGGAGCTGACCTGGTAATGAGGTGAACTGG
TCATTAGGCAAACTGGCTGAGGGTGGCCAGGGCAGCACATGAAGCCGGTG
GGCAGCTGTAACCTTCATCTTCTCTCCTCTGAGAGTATGGGTGCTGGGTC
TAGATGGATAGAAGAAACCCCAAGAAAACGGTGTCAGGAATGGACCTAGA
GCAGGCTTTCTGAGCACCGAGCCTGTGCCTGGCAAGTGAAGGAAGAGGAG
GAGATGGGGGAGAAATAGGAGCAGGAATGCTCAGAGATTCTGAGCTTTGG
GGAAGCTACAGTTTGCCAGCAGGCCCTAGAGTATTCTGATGTTCTAGAGT
AGGCTATTGTGCGTAGACTGTAGCAAGCAGAGCCAGGTCTCAGGATCTGT
TTCTTCCCTGAGCCTGTTTTGTTTCTTTGTTTGTTTGGCTTGTTTTTGTT
TTTCTGAGACAAGGTTTCTCTGTATAGTCCTAGCTGTCCTGGACCTTCCT
CTGTATACCAGGTTGGCCTTGATCTCATAAAACTGCTCTCCTCTTGCCTC
CAAGTGCTGGCTATTACGGATTGTTCCCTCATTGTTTTTGTTTTCTTTTA
AGCTGTTTCCGATGGGGTGTTTTCTTTTTTTACTTTACTCTATCAGTCTC
TCCCTATTATTTCATACCGTCCCCCCATTTTTTTTATCTCCGTCCC

TGGGAGAAGGAGTGGAGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATGGTCCTGTTGGA
GTGCACCATGGAATCTGTTCCTATAGTTATAATCTTATATCTGTTATGTT
GATAACTGCTGTTTACTTCTTTTCCTTTGACAAGCATATAAGGCAAGACA
AATGGCTGATTTAACATCTTGCTCAGATTGCTTAAGCAGCCACTATGATC
TATGTGCCAGCTGCCTTGTTGTGCCTATAGCACCCTCCTGTGGCTCCATC
TAGTTAGGGAGGGGGAATATCTAGTGCCATATCTTGTAAAAAGATGCAGC
AATCCCAAGGATCGGTGTAGGTTCATCAGTTGCTCATATCTATTTATGTT
TCTGTAATTTTGCTAGAAATACATACATGTCCATGGTCTAAAGGTCAGAT
TCTGTGGTAGTGGTTGTAACCCTAAGGAACTTTGATCCTTTCTTTTTCTA
GTATGAGGACCTGAGGTCAAATCATCAGTAATGTTAAGAGCTAATCTTGT
CATTTAAGTGGGCTTATAACTAAACTGCTGTGAGCCCGCCGAGTCAGTTC
TATCTCTGGGGCTTGTTGGTTGTCCACCTATTTCCCTGCTTCTTTGAAAT
ATTTTGTCTTCATGTTTACTCATGATCTTACTTTATTCCTTGAAATCTTT
ATTTCCCTCCCTGTTTCCTTTTCTGTGGGCCTTTCTCTTTCTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no539_i05.b1 MSMg01no539_i05.b1 CHROMAT_FILE:
MSMg01no539_i05.b1 PHD_FILE: MSMg01no539_i05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:29 2005
         (474 letters)



>mm_chrX_70841461_70842334
          Length = 874

 Score =  870 bits (450), Expect = 0.0
 Identities = 465/470 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaaatttactggagctgacctggtaatgaggtgaactggtcattaggcaaactg 64
           |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaaattcaatggagctgacctggtaatgaggtgaactggtcattaggcaaactg 264

                                                                       
Query: 65  gctgagggtggccagggcagcacatgaagccggtgggcagctgtaaccttcatcttctct 124
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 265 gctgagggtggccagggcagcacatgaagccagtgggcagctgtaaccttcatcttctct 324

                                                                       
Query: 125 cctctgagagtatgggtgctgggtctagatggatagaagaaaccccaagaaaacggtgtc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cctctgagagtatgggtgctgggtctagatggatagaagaaaccccaagaaaacggtgtc 384

                                                                       
Query: 185 aggaatggacctagagcaggctttctgagcaccgagcctgtgcctggcaagtgaaggaag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aggaatggacctagagcaggctttctgagcaccgagcctgtgcctggcaagtgaaggaag 444

                                                                       
Query: 245 aggaggagatgggggagaaataggagcaggaatgctcagagattctgagctttggggaag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aggaggagatgggggagaaataggagcaggaatgctcagagattctgagctttggggaag 504

                                                                       
Query: 305 ctacagtttgccagcaggccctagagtattctgatgttctagagtaggctattgtgcgta 364
           |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct: 505 ctacagtttgccagcaggccctagagtattctgatgttctagagtaggctgttgtgtgta 564

                                                                       
Query: 365 gactgtagcaagcagagccaggtctcaggatctgtttcttccctgagcctgttttgtttc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gactgtagcaagcagagccaggtctcaggatctgtttcttccctgagcctgttttgtttc 624

                                                             
Query: 425 tttgtttgtttggcttgtttttgtttttctgagacaaggtttctctgtat 474
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tttgtttgtttggcttgtttttgtttttctgagacaaggtttctctgtat 674


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space:   400896
Effective search space used:   400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no539_i05.g1 MSMg01no539_i05.g1 CHROMAT_FILE:
MSMg01no539_i05.g1 PHD_FILE: MSMg01no539_i05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:30 2005
         (419 letters)



>mm_chrX_70945576_70946394
          Length = 819

 Score =  795 bits (411), Expect = 0.0
 Identities = 417/419 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   catggtcctgttggagtgcaccatggaatctgttcctatagttataatcttatatctgtt 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 619 catggtcctgttggagtgcaccatggaatctgttcctacagttataatcttatatctgtt 560

                                                                       
Query: 61  atgttgataactgctgtttacttcttttcctttgacaagcatataaggcaagacaaatgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 atgttgataactgctgtttacttcttttcctttgacaagcatataaggcaagacaaatgg 500

                                                                       
Query: 121 ctgatttaacatcttgctcagattgcttaagcagccactatgatctatgtgccagctgcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ctgatttaacatcttgctcagattgcttaagcagccactatgatctatgtgccagctgcc 440

                                                                       
Query: 181 ttgttgtgcctatagcaccctcctgtggctccatctagttagggagggggaatatctagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ttgttgtgcctatagcaccctcctgtggctccatctagttagggagggggaatatctagt 380

                                                                       
Query: 241 gccatatcttgtaaaaagatgcagcaatcccaaggatcggtgtaggttcatcagttgctc 300
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 379 gccatatcttgtaaaaagatgcagcaatcccaagaatcggtgtaggttcatcagttgctc 320

                                                                       
Query: 301 atatctatttatgtttctgtaattttgctagaaatacatacatgtccatggtctaaaggt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 atatctatttatgtttctgtaattttgctagaaatacatacatgtccatggtctaaaggt 260

                                                                      
Query: 361 cagattctgtggtagtggttgtaaccctaaggaactttgatcctttctttttctagtat 419
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 cagattctgtggtagtggttgtaaccctaaggaactttgatcctttctttttctagtat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 819
Length adjustment: 9
Effective length of query: 410
Effective length of database: 810
Effective search space:   332100
Effective search space used:   332100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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