BAC Information

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BAC

Clone NameMSMg01-541G17
ChromosomeX (Build37)
Map Location 84,646,344 - 84,791,918
singlet/doubletdoublet
Overlap geneIl1rapl1
Upstream genenone
Downstream geneLOC667876, EG667883
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-541G17.T7 (MSMg01no541_g17.b1)MSMg01-541G17.TJ (MSMg01no541_g17.g1)
ACCAG607438AG607439
length770762
length of high quality
(start - end)		723 (44 - 766)689 (72 - 760)
definitionCHROMAT_FILE: MSMg01no541_g17.b1 PHD_FILE: MSMg01no541_g17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:21:03 2005CHROMAT_FILE: MSMg01no541_g17.g1 PHD_FILE: MSMg01no541_g17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:21:03 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,646,344 - 84,647,062)(84,791,367 - 84,791,918)
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCACTTAACTCTGCTTCCAGCAGCTTCTAGAATCTAATATAGAGTTGTT
TATGAATCAATTCCATGCATTTTATGGACACAATATAAAAGGTATTCCTT
TGTGAGTCTATTATATCAATTTGTGAGTAACTAATGCTAGAACTTCTGAC
ATAAAATATGCTATTTTCTGTTAATATTATTAGTACAACGTAACTGCAAG
TCTATCATTTAATAGATTGTGTTCAAGACAATACCCAGGAAGACAAAATT
AAGCCTTGGTATTTATACATAGAGCAAAATTTTGTTGCCATATTATCGTA
ACCATTTTTCTACTAAAAATGCCATCAAAAGTGAAATGATATTTGGATTA
AAGAAAATCTCAATTCATTGAAACAGATAGAGGGACATCTGCTTGAATTA
TTGGAAGAAAATCAATTATAACACATTTTAAAATAATTTTGAGTCGCTTT
TGGTTTCTGAATAAAAATCTACCTTGATTTTCTGTACTTCTATTTGCTAG
TTTCAGGAGTGCTCTGTTTAGTTTCTCTGGATAACCTTTGTGAACATTAA
GCTGAAAAATGATACAATTTTTACACTGAAATAAAAAAGGTCTCTCCAAG
TCTACATTATATGATTCTAGGCTAAATAAGAACCACTGAGAAAAGTGTCT
GTTCTGACACATGGATAAGAATGGTGTGGAAATCATGTAATGACCATTTC
AAACCAAATAATAAGGTCCC

CATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCTCATTGTAATATATGGGTCCCATGGGG
GGAAAAATAACCTCAACTTATTAGGCTTGGTAGTGAGTACCATTACCTAC
TGAACCATCATTCTGGCCCTTGGAAATATTATATGACAGAAATAGATATG
AATTGTAACTATCCCAATCAAATTTATTTTTTACATGCTCTTGGGCAAAT
TAATTTACTTCACTAAGACTCTGATTTATGTTCTGAGATATTAGTTCCCT
AGTATCACCTACTAAAAAGGATCATGGTTTGATTAATTGGGATAATGCAT
ATACATAGTTTAGGATAGTTCCTGCTGTAAAAGTGCTTAATAAATTTTAG
GTATATTAATTATTATTACTGTTAGTCATATTACATCATATTTCTAATGA
ACTTAATATCCTATTATATGAAGAATATAAACAAATCCAAAAGTCTCAAA
TATACATTTGATATTTGAAATAAAAGCCACATAATTGAAGACAAATAACA
AAAAACAGCCTAAATTAAAAGTCCATATGTGGCTTGATTTTAAATTTTTA
TTTTAAGCCTGAATAGTTATGTTATTTTTTGCACGATCATGGGTGCATAT
CTCCACACTCTCTGAACAGCACAGATTCTAATTTATAAAAAAGCATTTCT
ACTACTCTATACTTCCTATTGCAAAACTTATGCTTAATAATACGACAACG
CAGTAAAGGGCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no541_g17.b1 MSMg01no541_g17.b1 CHROMAT_FILE:
MSMg01no541_g17.b1 PHD_FILE: MSMg01no541_g17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:03 2005
         (723 letters)



>mm_chrX_84646140_84647262
          Length = 1123

 Score = 1382 bits (715), Expect = 0.0
 Identities = 718/719 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacttaactctgcttccagcagcttctagaatctaatatagagttgtttatgaat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacttaactctgcttccagcagcttctagaatctaatatagagttgtttatgaat 264

                                                                       
Query: 65  caattccatgcattttatggacacaatataaaaggtattcctttgtgagtctattatatc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 caattccatgcattttatggacacaatataaaaggtattcctttgtgagtctattatatc 324

                                                                       
Query: 125 aatttgtgagtaactaatgctagaacttctgacataaaatatgctattttctgttaatat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aatttgtgagtaactaatgctagaacttctgacataaaatatgctattttctgttaatat 384

                                                                       
Query: 185 tattagtacaacgtaactgcaagtctatcatttaatagattgtgttcaagacaataccca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tattagtacaacgtaactgcaagtctatcatttaatagattgtgttcaagacaataccca 444

                                                                       
Query: 245 ggaagacaaaattaagccttggtatttatacatagagcaaaattttgttgccatattatc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ggaagacaaaattaagccttggtatttatacatagagcaaaattttgttgccatattatc 504

                                                                       
Query: 305 gtaaccatttttctactaaaaatgccatcaaaagtgaaatgatatttggattaaagaaaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gtaaccatttttctactaaaaatgccatcaaaagtgaaatgatatttggattaaagaaaa 564

                                                                       
Query: 365 tctcaattcattgaaacagatagagggacatctgcttgaattattggaagaaaatcaatt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tctcaattcattgaaacagatagagggacatctgcttgaattattggaagaaaatcaatt 624

                                                                       
Query: 425 ataacacattttaaaataattttgagtcgcttttggtttctgaataaaaatctaccttga 484
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 625 ataacacattttaaaataattttgagtcgcttttgatttctgaataaaaatctaccttga 684

                                                                       
Query: 485 ttttctgtacttctatttgctagtttcaggagtgctctgtttagtttctctggataacct 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ttttctgtacttctatttgctagtttcaggagtgctctgtttagtttctctggataacct 744

                                                                       
Query: 545 ttgtgaacattaagctgaaaaatgatacaatttttacactgaaataaaaaaggtctctcc 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ttgtgaacattaagctgaaaaatgatacaatttttacactgaaataaaaaaggtctctcc 804

                                                                       
Query: 605 aagtctacattatatgattctaggctaaataagaaccactgagaaaagtgtctgttctga 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 aagtctacattatatgattctaggctaaataagaaccactgagaaaagtgtctgttctga 864

                                                                      
Query: 665 cacatggataagaatggtgtggaaatcatgtaatgaccatttcaaaccaaataataagg 723
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 cacatggataagaatggtgtggaaatcatgtaatgaccatttcaaaccaaataataagg 923


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 723
Length of database: 1123
Length adjustment: 10
Effective length of query: 713
Effective length of database: 1113
Effective search space:   793569
Effective search space used:   793569
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no541_g17.g1 MSMg01no541_g17.g1 CHROMAT_FILE:
MSMg01no541_g17.g1 PHD_FILE: MSMg01no541_g17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:03 2005
         (689 letters)



>mm_chrX_84790830_84791918
          Length = 1089

 Score = 1060 bits (548), Expect = 0.0
 Identities = 551/552 (99%)
 Strand = Plus / Minus

                                                                        
Query: 138  ctatcccaatcaaatttattttttacatgctcttgggcaaattaatttacttcactaaga 197
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1089 ctatcccaatcaaatttattttttacatgctcttgggcaaattaatttacttcactaaga 1030

                                                                        
Query: 198  ctctgatttatgttctgagatattagttccctagtatcacctactaaaaaggatcatggt 257
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1029 ctctgatttatgttctgagatattagttccctagtatcacctactaaaaaggatcatggt 970

                                                                        
Query: 258  ttgattaattgggataatgcatatacatagtttaggatagttcctgctgtaaaagtgctt 317
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 969  ttgattaattgggataatgcatatacatagtttaggatagttcctgctgtaaaagtgctt 910

                                                                        
Query: 318  aataaattttaggtatattaattattattactgttagtcatattacatcatatttctaat 377
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 909  aataaattttaggtatattaattattattactgttagtcatattacatcatatttctaat 850

                                                                        
Query: 378  gaacttaatatcctattatatgaagaatataaacaaatccaaaagtctcaaatatacatt 437
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 849  gaacttaatatcctattatatgaagaatataaacaaatccaaaagtctcaattatacatt 790

                                                                        
Query: 438  tgatatttgaaataaaagccacataattgaagacaaataacaaaaaacagcctaaattaa 497
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789  tgatatttgaaataaaagccacataattgaagacaaataacaaaaaacagcctaaattaa 730

                                                                        
Query: 498  aagtccatatgtggcttgattttaaatttttattttaagcctgaatagttatgttatttt 557
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729  aagtccatatgtggcttgattttaaatttttattttaagcctgaatagttatgttatttt 670

                                                                        
Query: 558  ttgcacgatcatgggtgcatatctccacactctctgaacagcacagattctaatttataa 617
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669  ttgcacgatcatgggtgcatatctccacactctctgaacagcacagattctaatttataa 610

                                                                        
Query: 618  aaaagcatttctactactctatacttcctattgcaaaacttatgcttaataatacgacaa 677
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609  aaaagcatttctactactctatacttcctattgcaaaacttatgcttaataatacgacaa 550

                        
Query: 678  cgcagtaaaggg 689
            ||||||||||||
Sbjct: 549  cgcagtaaaggg 538


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 689
Length of database: 1089
Length adjustment: 10
Effective length of query: 679
Effective length of database: 1079
Effective search space:   732641
Effective search space used:   732641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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