BAC Information

Click to search

BAC

Clone NameMSMg01-542I03
ChromosomeX (Build37)
Map Location 74,494,344 - 74,712,598
singlet/doubletdoublet
Overlap geneLOC385474, EG436208, LOC546331, LOC100041212
Upstream geneLOC100041147, EG238829, Magea7, 4930428D18Rik, EG544974, 4930468A15Rik
Downstream geneTbl1x, EG628893, LOC667606, Prkx, Pbsn, OTTMUSG00000017866, LOC100042001, 5430402E10Rik, LOC628976, Obp1a, EG546335, EG628991, LOC236874, EG667658, 4930480E11Rik, EG667672, Prrg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-542I03.T7 (MSMg01no542_i03.b1)MSMg01-542I03.TJ (MSMg01no542_i03.g1)
ACCAG608266AG608267
length731729
length of high quality
(start - end)		679 (53 - 731)590 (83 - 672)
definitionCHROMAT_FILE: MSMg01no542_i03.b1 PHD_FILE: MSMg01no542_i03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:22:34 2005CHROMAT_FILE: MSMg01no542_i03.g1 PHD_FILE: MSMg01no542_i03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:22:34 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,711,929 - 74,712,598)(74,494,344 - 74,494,933)
sequence
GTTTTTGTCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAG
GATCCGCGGAATTCCTGCCCAGATTCCCCAAACCATCACCCTAACAACGC
AATGGTTCTCCTTTGTTGAGCACAAAGCAGTGAGTATAAACAGAAGATGA
AGGGATGGAGGAATGCTAAGTGAGTCGGAGATGTTCACAAAGCAACAGTT
TCACCTGGAGTATGGCTTTGTTATTGGGGAGTCTGTGGCCATGCTTATAG
GAAAGCACGTATCAGAATTTTGGTACATTTGTGAACATGTTCAGCTTAAG
GTGCATATTTCTGACCTTGCTTGGGTCAAGGTCATAGATCACATATGTTA
AAAGGATATATGGTATCTGTGACATGCTCAATTCATGAAGCAACTTTATT
CTGAGTTGCCTAAAAAGGTGAGGCAAAGCGATTTGTAAGTTTCTCCAAAG
CATTTAAGTTGAAACAGATAAAGCAACTTTGAAGATACAATTAGACTTAT
TTCTTTTTCTTATTTACTTAATTTTGTATTTTATATGTTCTTCCTGCACA
TATGTGTTCTGTGTGCATGTCTGGTGCATGAGAAAACCAGAGGAAGGTGC
TGGACTACAGTTGGGAGCCATCATGTGAGTGCTGGGAACCAAACCAGGTC
CTCGGAAAGAGCAACAAGTGCTCTTAAATGCTGGGCCATCTTACCAGCCC
TTTGTGCTCTCTCTCTCTCTCTCTCTCTCTN

TTTTTTTTCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTAACCCCCATGACTCT
GAACTGTCTTTACTTAGAAGGATGGGGAGCAATAAGCCAGAGGCAGAAAG
AGTGACCAGAAGAGCTCCCTGTGTTTTCTTTTGCAGGAAAAGTAAAAGGA
AAATTGTTTACCACTGTGTCATAAGGTCTACTGGCAGTTCTAAATACTGA
ACATAATAAATACTGCACACAAGCAGTATTTACAAATGGAAAAAGAAAAG
GCAGCATGCCAATATGATGCTCTTAGCTCCCTTTATGTTTTCATTGTGGG
AGTATAGCATAATTTCTGCAGGCTTTCTGCCCTCTGTTGTTTGTAACAGA
CAGTAAAGAGCAGCCCCTGAGAGACACCATGGACATACAAATAGCCCTCC
CCAGACACATCTGAAGAGGCTCAAGTCCCTAGAAATTGCTTGCCTGGAAC
TTACCTTTCCTTTGAGGGATCCTGTTACCTTATTTTTCAAAGAGAATAGA
GAAAATTTCTAGAAACTTTAAGTTCCTACAGAAGATAAATAATCATTATA
AACATTTTGCCCCAAATTTATATTACAAATGACATTTAAACCCCAGTAAG
AATGTCCGTTTGTTTTTTATTCAAATTGTATCATCTCCTTCCAACAAATA
AATTAAGCTTGTGTTCTTCACCCAGCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no542_i03.b1 MSMg01no542_i03.b1 CHROMAT_FILE:
MSMg01no542_i03.b1 PHD_FILE: MSMg01no542_i03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:34 2005
         (679 letters)



>mm_chrX_74711929_74713007
          Length = 1079

 Score = 1257 bits (650), Expect = 0.0
 Identities = 665/670 (99%)
 Strand = Plus / Minus

                                                                       
Query: 6   ggaattcctgcccagattccccaaaccatcaccctaacaacgcaatggttctcctttgtt 65
           ||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 ggaattcctgcccagagaacccaaaccatcaccctaacaacgcaatggttctcctttgtt 611

                                                                       
Query: 66  gagcacaaagcagtgagtataaacagaagatgaagggatggaggaatgctaagtgagtcg 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 gagcacaaagcagtgagtataaacagaagatgaagggatggaggaatgctaagtgagtcg 551

                                                                       
Query: 126 gagatgttcacaaagcaacagtttcacctggagtatggctttgttattggggagtctgtg 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 gagatgttcacaaagcaacagtttcacctggagtatggctttgttattggggagtctgtg 491

                                                                       
Query: 186 gccatgcttataggaaagcacgtatcagaattttggtacatttgtgaacatgttcagctt 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 gccatgcttataggaaagcacgtatcagaattttggtacatttgtgaacatgttcagctt 431

                                                                       
Query: 246 aaggtgcatatttctgaccttgcttgggtcaaggtcatagatcacatatgttaaaaggat 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 aaggtgcatatttctgaccttgcttgggtcaaggtcatagatcacatatgttaaaaggat 371

                                                                       
Query: 306 atatggtatctgtgacatgctcaattcatgaagcaactttattctgagttgcctaaaaag 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 atatggtatctgtgacatgctcaattcatgaagcaactttattctgagttgcctaaaaag 311

                                                                       
Query: 366 gtgaggcaaagcgatttgtaagtttctccaaagcatttaagttgaaacagataaagcaac 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gtgaggcaaagcgatttgtaagtttctccaaagcatttaagttgaaacagataaagcaac 251

                                                                       
Query: 426 tttgaagatacaattagacttatttctttttcttatttacttaattttgtattttatatg 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tttgaagatacaattagacttatttctttttcttatttacttaattttgtattttatatg 191

                                                                       
Query: 486 ttcttcctgcacatatgtgttctgtgtgcatgtctggtgcatgagaaaaccagaggaagg 545
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 ttcttcctgcacatatgtgttctgtgtgcatgtctggtgcatgagaaaaccagaggaagg 131

                                                                       
Query: 546 tgctggactacagttgggagccatcatgtgagtgctgggaaccaaaccaggtcctcggaa 605
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 130 tgctggactacagttgggagccatcatgtgagtgctgggaaccaaaccaggtccgcggaa 71

                                                                       
Query: 606 agagcaacaagtgctcttaaatgctgggccatcttaccagccctttgtgctctctctctc 665
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 70  agagcaacaagtgctcttaaatgctgggccatcttaccagccctttgttctctctctctc 11

                     
Query: 666 tctctctctc 675
           ||||||||||
Sbjct: 10  tctctctctc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1079
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1069
Effective search space:   715161
Effective search space used:   715161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no542_i03.g1 MSMg01no542_i03.g1 CHROMAT_FILE:
MSMg01no542_i03.g1 PHD_FILE: MSMg01no542_i03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:34 2005
         (590 letters)



>mm_chrX_74494144_74495133
          Length = 990

 Score = 1110 bits (574), Expect = 0.0
 Identities = 586/590 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctaacccccatgactctgaactgtctttacttagaaggatggggagcaataagccagag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctaacccccatgactctgaactgtctttacttagaaggatggggagcaataagccagag 260

                                                                       
Query: 61  gcagaaagagtgaccagaagagctccctgtgttttcttttgcaggaaaagtaaaaggaaa 120
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcagaaatagtgaccagaagagctccctgtgttttcttttgcaggaaaagtaaaaggaaa 320

                                                                       
Query: 121 attgtttaccactgtgtcataaggtctactggcagttctaaatactgaacataataaata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 321 attgtttaccactgtgtcataaggtctactggcagttctaaatactgaagataataaata 380

                                                                       
Query: 181 ctgcacacaagcagtatttacaaatggaaaaagaaaaggcagcatgccaatatgatgctc 240
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgcacacaagcagtatttacaaacggaaaaagaaaaggcagcatgccaatatgatgctc 440

                                                                       
Query: 241 ttagctccctttatgttttcattgtgggagtatagcataatttctgcaggctttctgccc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttagctccctttatgttttcattgtgggagtatagcataatttctgcaggctttctgccc 500

                                                                       
Query: 301 tctgttgtttgtaacagacagtaaagagcagcccctgagagacaccatggacatacaaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctgttgtttgtaacagacagtaaagagcagcccctgagagacaccatggacatacaaat 560

                                                                       
Query: 361 agccctccccagacacatctgaagaggctcaagtccctagaaattgcttgcctggaactt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agccctccccagacacatctgaagaggctcaagtccctagaaattgcttgcctggaactt 620

                                                                       
Query: 421 acctttcctttgagggatcctgttaccttatttttcaaagagaatagagaaaatttctag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acctttcctttgagggatcctgttaccttatttttcaaagagaatagagaaaatttctag 680

                                                                       
Query: 481 aaactttaagttcctacagaagataaataatcattataaacattttgccccaaatttata 540
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaactttaagttcctacaaaagataaataatcattataaacattttgccccaaatttata 740

                                                             
Query: 541 ttacaaatgacatttaaaccccagtaagaatgtccgtttgttttttattc 590
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttacaaatgacatttaaaccccagtaagaatgtccgtttgttttttattc 790


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 990
Length adjustment: 10
Effective length of query: 580
Effective length of database: 980
Effective search space:   568400
Effective search space used:   568400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |