BAC Information

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BAC

Clone NameMSMg01-543B07
ChromosomeX (Build37)
Map Location 74,106,736 - 74,107,373
singlet/doubletsinglet
Overlap genenone
Upstream genePls3, LOC635275, EG635295, LOC667537, LOC385472, LOC100041147, EG238829, Magea7, 4930428D18Rik, EG544974, 4930468A15Rik
Downstream geneLOC385474, EG436208, LOC546331, LOC100041212, Tbl1x, EG628893, LOC667606, Prkx, Pbsn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-543B07.T7 (MSMg01no543_b07.b1)MSMg01-543B07.TJ (MSMg01no543_b07.g1)
ACCAG608702AG608703
length740754
length of high quality
(start - end)
688 (53 - 740)638 (83 - 720)
definitionCHROMAT_FILE: MSMg01no543_b07.b1 PHD_FILE: MSMg01no543_b07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:23:19 2005CHROMAT_FILE: MSMg01no543_b07.g1 PHD_FILE: MSMg01no543_b07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:23:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCCTATCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCATATTTTATTCCGCCCATTGACCCTCTGAATGTTCCA
CATTCCATATCTCCTCCCCATGCCCCTGTCTTCATGTGAATGTCCCCATC
ATCCACCCCACATGACCTCTAAACTTCGTAGGGCCTCCAGTCTCTTAAGG
GTTAGGTACATCAACTTTGAATGAACACAGACATGGGAGTCCTCTGCTGT
ATTTGTGTTGGGGGCCTCATATCAGCTGGTGTAGTATATACTGTCTGTTT
GGTGGTCCACTGTTTGAGAGATCTCAGGGGTCCAGATTAATTGAGACTGC
TGGTCCTTCTACATGGTTGCCCTTCTCCTCAGCTTCTTTCAGCCTTCCCT
AATTCAACAGCAGGTGTCAGCTGCTTCTGTCCATTGGTTGGGTGCAAATA
TCTGCATCTGACTCTGTCAGCTGCTTGCTGGATCTTCTGGAGTGTGGTCA
TGCTAGGTCCCTTTTTGCGAGTGCTCCATAGCCTGTGTCAGGCCTTGGAA
CCTTCCCTTGAGCTGGATCCCACTTTGGGCCTGATGCTGTACCTTTTTTT
TTTCCCTTAGGCTCCTCTCCATTTCCTCCCCTGTAATTCTTTCAGACAGA
GACAATTATGGGTCAGAGTTGTGACTGTGGGATGGCCCCCATCCTTCATT
TGATGCCCTGTCTTCCTGCTGGAGGTGGGCTCTTTAAGTT
AATTTCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAATTTCCCCTCATGGAT
ACCACTCCAATGACATAATTTCTTCCTACTAGGACCACCTCTTAATCCAC
TACATCTTCATAACATCATGCTTTTAATTTCACTAAAAGGTAAATGTGCC
TTTGTGGGACATTCAATATTAAAATTATAGCAATAACCAACAGCTTTCTA
GAGCCATTTACTATTTGTTATTTCCTGAGTCTTCTGAGTTTTATTCTTTA
ATTTTTTTCCTGGGTTATATTTGACCAGATGGTTCAATGACAGAGCAATG
TTAGAACACTGTACTATTTATGGTATTCCATAATTTTCATTAATTAAAAT
AAATTTGCATCAGGAAATTTTATGACCCCTTTGTGTCTCTTAGTCTCAAG
ATCAAGAAAACAATCTATCATATAGCATGAATTTCCATGCCATGTCCGAC
CAGGGCACAGCAGTCATAAAATCCTGTGTGTCTCACTGCCAATACCTTAC
TTACCTCTGGGATAACCACCCACCCTTCAAGTCATGTAGTTTTCTCACTC
TCCTTTGACTACTTTCTTTTTTCTCTGGTATTCATATTTTTCTTGATTGA
TAAGTATATAAGAGAAAGGACAAAATGAACTGGGGAAGAAATGAAACCAG
TATGAGGTGTATGGTAGAGGATGAGTAAGTCACTTCCTAAGGTGCAGAAT
TTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no543_b07.g1 MSMg01no543_b07.g1 CHROMAT_FILE:
MSMg01no543_b07.g1 PHD_FILE: MSMg01no543_b07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:19 2005
         (638 letters)



>mm_chrX_74106536_74107573
          Length = 1038

 Score = 1218 bits (630), Expect = 0.0
 Identities = 636/638 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caatttcccctcatggataccactccaatgacataatttcttcctactaggaccacctct 60
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 201 caatttcccctcatggataccactccaatgacttaatttcttcctactaggaccacctct 260

                                                                       
Query: 61  taatccactacatcttcataacatcatgcttttaatttcactaaaaggtaaatgtgcctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taatccactacatcttcataacatcatgcttttaatttcactaaaaggtaaatgtgcctt 320

                                                                       
Query: 121 tgtgggacattcaatattaaaattatagcaataaccaacagctttctagagccatttact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 tgtgggacattcaatattaaaattatagcaataaccaacagctttctagagccgtttact 380

                                                                       
Query: 181 atttgttatttcctgagtcttctgagttttattctttaatttttttcctgggttatattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atttgttatttcctgagtcttctgagttttattctttaatttttttcctgggttatattt 440

                                                                       
Query: 241 gaccagatggttcaatgacagagcaatgttagaacactgtactatttatggtattccata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaccagatggttcaatgacagagcaatgttagaacactgtactatttatggtattccata 500

                                                                       
Query: 301 attttcattaattaaaataaatttgcatcaggaaattttatgacccctttgtgtctctta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attttcattaattaaaataaatttgcatcaggaaattttatgacccctttgtgtctctta 560

                                                                       
Query: 361 gtctcaagatcaagaaaacaatctatcatatagcatgaatttccatgccatgtccgacca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtctcaagatcaagaaaacaatctatcatatagcatgaatttccatgccatgtccgacca 620

                                                                       
Query: 421 gggcacagcagtcataaaatcctgtgtgtctcactgccaataccttacttacctctggga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gggcacagcagtcataaaatcctgtgtgtctcactgccaataccttacttacctctggga 680

                                                                       
Query: 481 taaccacccacccttcaagtcatgtagttttctcactctcctttgactactttctttttt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 taaccacccacccttcaagtcatgtagttttctcactctcctttgactactttctttttt 740

                                                                       
Query: 541 ctctggtattcatatttttcttgattgataagtatataagagaaaggacaaaatgaactg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctctggtattcatatttttcttgattgataagtatataagagaaaggacaaaatgaactg 800

                                                 
Query: 601 gggaagaaatgaaaccagtatgaggtgtatggtagagg 638
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gggaagaaatgaaaccagtatgaggtgtatggtagagg 838


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1038
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1028
Effective search space:   645584
Effective search space used:   645584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)