BAC Information

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BAC

Clone NameMSMg01-543C19
ChromosomeX (Build37)
Map Location 41,535,077 - 41,535,464
singlet/doubletsinglet
Overlap genenone
Upstream geneOdz1, Gm362, LOC100039977, LOC100039987
Downstream geneLOC637141, Wdr40c, Wdr40b, LOC665585, 1110059M19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-543C19.T7 (MSMg01no543_c19.b1)MSMg01-543C19.TJ (MSMg01no543_c19.g1)
ACCAG608774AG608775
length766778
length of high quality
(start - end)		210 (49 - 258)557 (81 - 637)
definitionCHROMAT_FILE: MSMg01no543_c19.b1 PHD_FILE: MSMg01no543_c19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:23:27 2005CHROMAT_FILE: MSMg01no543_c19.g1 PHD_FILE: MSMg01no543_c19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:23:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNTTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTTGTTTAGCTCTGAACCCCATTTTTTAATGGGGTTATTTGA
TTTTCTGGAGTCCACCTTCTTGAGTTCTTTATATATATTGGATATTAGTC
CCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGGGAA
AGGGGAATGCCAGGGCCAAAAAATGGGAATGGGTGGGTAGGGGAGTGGGG
GGGGGAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNTNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNN

NNNCCAATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAGCCCATGGTCAGCTCAA
GGACTTTCTAGGACATTGGAACACTGGTGAAGGCTTAGCTATGTCAGAAT
TCAATCTTAAAAGGCACTTATAATAAGATAATACTAAAAGATCCATACAC
CAGACTAACTGGGAAGATGGGGTATGAGTATATGGGTTAAAGAGAACGCC
AGACTCCAGGAGGTGAGTTTCCCGTGAAACTCTCTGCCTCGTGAGTGGCT
TTCAGGCCTCTCAGCCTGTAAAGCTGACCTGACCGGAGTGCATGGCAAAG
AGTTGTTCTCTGATCTCCACATATGTGCCATGTAACATGTGACCTGTGAA
CACATATCCACACAAATTTATGGTGATATTATTATTATTATTATTATTAC
ATTTTAAAAGTATTGCACATCATAAAAAGACAACAAATATGTTGTTGTTC
TTGTTTGCTGTTTAATACCATGGGTGATTTTCAGGGCATTTTAATTGTAT
TTTGATCTTAGGGAATTGAGTGTACCAATATCTTTCTGCCAAACACATGA
GTTAGAAATTAAGTATTCAATGTCATAGTAAATTGTAGAGTTACTCTTCT
TTTCTTTTTTTTTTCCATTTTTTATTAGGTATTTCGCTCATTTACATTTG
CATGTAAATAACAAAAGTCCCCCATAGNCACCCACCCCCTCTCCCCTAAC
CACCANNTCCCCTTTATGGCCCTGGCGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no543_c19.g1 MSMg01no543_c19.g1 CHROMAT_FILE:
MSMg01no543_c19.g1 PHD_FILE: MSMg01no543_c19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:27 2005
         (557 letters)



>mm_chrX_41534508_41535464
          Length = 957

 Score =  725 bits (375), Expect = 0.0
 Identities = 386/391 (98%), Gaps = 3/391 (0%)
 Strand = Plus / Minus

                                                                       
Query: 167 cgccagactccaggaggtgagtttcccgtgaaactctctgcctcgtgagtggctttcagg 226
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 957 cgccagactccaggaggtgagtttcccgtgaaactctctgcctcgtgagtggctttcagg 898

                                                                       
Query: 227 cctctcagcctgtaaagctgacctgaccggagtgcatggcaaagagttgttctctgatct 286
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 897 cctctcagcctgtaaagctgacctgaccggagtgcatggcaaagagttgttctctgatct 838

                                                                       
Query: 287 ccacatatgtgccatgtaacatgtgacctgtgaacacatatccacacaaatttatggtga 346
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 837 ccacatatgtgccatgtaacatgtgacctgtgaacacatatccacacaaatttatggtga 778

                                                                       
Query: 347 tattattattattattattattacattttaaaagtattgcacatcataaaaagacaacaa 406
              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 ---tattattattattattattacattttaaaagtattgcacatcataaaaagacaacaa 721

                                                                       
Query: 407 atatgttgttgttcttgtttgctgtttaataccatgggtgattttcagggcattttaatt 466
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 atatgttattgttcttgtttgctgtttaataccatgggtgattttcagggcattttaatt 661

                                                                       
Query: 467 gtattttgatcttagggaattgagtgtaccaatatctttctgccaaacacatgagttaga 526
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 660 gtattttgatcttagggaattgagtgtaccaatatctttctgccaaacacattagttaga 601

                                          
Query: 527 aattaagtattcaatgtcatagtaaattgta 557
           |||||||||||||||||||||||||||||||
Sbjct: 600 aattaagtattcaatgtcatagtaaattgta 570


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space:   518009
Effective search space used:   518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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