NNNAACTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTGGAGCCATACCAGTTAGGAACTCATGCTGAAGAAAATAAT
ATTTTAGAGCCTTTCATATGCATTTAACTCTTCAGCAGGAGAAACTAATA
AGAGACTTTTGCTTTATCACTTTCTCACAGCTCCTGTTTTTGTTTTTCCC
CAAGGAAAATCTCATAGGACTGATATTTCACAAGCCTTTTTTGGGAAATG
CTGGGTGGGTATATGAAATTTTAGTATTGATGTTTTTGTCTTGTCTATAA
TGAACTGTGGGCAAACATGGAGGTTTTCTCTTATGGTTTAAGGATTTCAC
TGTTTCCTGAATCTTATTCAAAATAGATCCCAAATAGTGAAAAGGCCTCT
AACTACAAATATCTGTGTATTAGAAGTGAACAGATCTCACCATAACAAAT
TCATTTTTTGTCAAACATTCAGATTTTCACTGAATTATACTTCCATGGAC
AACAAAAACTTCTATGTGAACTATATATGGTCTGTTGGTATATTTGAGGA
TCTGTATCAGGAAGCCATAATGTTTATCTTTCAGGGGAATTTTACCTAAC
CCTATCCCAGAATTTTCTCTGAATTCCAGTTATAAACTCCTACAGACAAA
TCAAAGGAATCTTTTGTGGTAAATGTCACATGCAGGGAAAACGTGCATCC
TTTGTTAATTATAATGATGACTGCAATGCATGAGTATGCTATGATN

ATGTCGAGGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGC
TGAGAAGCACCTGAAAAAATGTCCAACATCCTTAATCATCAGCGAAATGC
AAATCAAAACAATGCTGAGATTCCATCTCACACCAGCCAGAATGGCTAAG
ATCAAAAATTCAGGTGACAGCAGATGTTGGCAAGGATGTGGAGAAAGAGG
ATCACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGA
AATCAGTCTGGTGGTTCCTCAGAAAATTGGACATAGTACTACTGGAGGAT
CCTGCAATACCTCTCCTGGGCATATATCCAAAAGATGTTCCAACTGGTAA
GAAGGACACATGTTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCA
AAACCTGGAAAGAACCCAGATGCCCCTCAACAGAAGAATGGATACAAAAA
ATGTGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAGGAATGA
ATTTATGAAATTCCTAGGCAAATGGTTGGATCTGGAGGGCATCATCCTGA
TTGAGGTAACACAATCACAAAAGAACTCATATGATATGTACTCACTGATA
AGTAGATATTAGCCCAGAAACTTAGTATACCTGAAATATAAGATAAAATT
TACAAAACACATGAAACTGAAGAAGAATGAAGACCAAAGTGTAGACC

Query= MSMg01no544_a19.b1 MSMg01no544_a19.b1 CHROMAT_FILE:
MSMg01no544_a19.b1 PHD_FILE: MSMg01no544_a19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:35 2005
         (696 letters)



>mm_chrX_58831998_58833094
          Length = 1097

 Score = 1324 bits (685), Expect = 0.0
 Identities = 691/693 (99%), Gaps = 1/693 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaattctggagccataccagttaggaactcatgctgaagaaaa-taatattttagagcct 62
           ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 204 gaattctggagccatacaagttaggaactcatgctgaagaaaattaatattttagagcct 263

                                                                       
Query: 63  ttcatatgcatttaactcttcagcaggagaaactaataagagacttttgctttatcactt 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttcatatgcatttaactcttcagcaggagaaactaataagagacttttgctttatcactt 323

                                                                       
Query: 123 tctcacagctcctgtttttgtttttccccaaggaaaatctcataggactgatatttcaca 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tctcacagctcctgtttttgtttttccccaaggaaaatctcataggactgatatttcaca 383

                                                                       
Query: 183 agccttttttgggaaatgctgggtgggtatatgaaattttagtattgatgtttttgtctt 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agccttttttgggaaatgctgggtgggtatatgaaattttagtattgatgtttttgtctt 443

                                                                       
Query: 243 gtctataatgaactgtgggcaaacatggaggttttctcttatggtttaaggatttcactg 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gtctataatgaactgtgggcaaacatggaggttttctcttatggtttaaggatttcactg 503

                                                                       
Query: 303 tttcctgaatcttattcaaaatagatcccaaatagtgaaaaggcctctaactacaaatat 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tttcctgaatcttattcaaaatagatcccaaatagtgaaaaggcctctaactacaaatat 563

                                                                       
Query: 363 ctgtgtattagaagtgaacagatctcaccataacaaattcattttttgtcaaacattcag 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ctgtgtattagaagtgaacagatctcaccataacaaattcattttttgtcaaacattcag 623

                                                                       
Query: 423 attttcactgaattatacttccatggacaacaaaaacttctatgtgaactatatatggtc 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 attttcactgaattatacttccatggacaacaaaaacttctatgtgaactatatatggtc 683

                                                                       
Query: 483 tgttggtatatttgaggatctgtatcaggaagccataatgtttatctttcaggggaattt 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tgttggtatatttgaggatctgtatcaggaagccataatgtttatctttcaggggaattt 743

                                                                       
Query: 543 tacctaaccctatcccagaattttctctgaattccagttataaactcctacagacaaatc 602
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tacctaaccctatcccagaattttctctgaattccagttataaactcctacagacaaatc 803

                                                                       
Query: 603 aaaggaatcttttgtggtaaatgtcacatgcagggaaaacgtgcatcctttgttaattat 662
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 aaaggaatcttttgtggtaaatgtcacatgcagggaaaacgtgcatcctttgttaattat 863

                                            
Query: 663 aatgatgactgcaatgcatgagtatgctatgat 695
           |||||||||||||||||||||||||||||||||
Sbjct: 864 aatgatgactgcaatgcatgagtatgctatgat 896


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 696
Length of database: 1097
Length adjustment: 10
Effective length of query: 686
Effective length of database: 1087
Effective search space:   745682
Effective search space used:   745682
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)