BAC Information

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BAC

Clone NameMSMg01-545B22
ChromosomeX (Build37)
Map Location 53,241,130 - 53,241,382
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100038960, EG666151, EG666161, EG666199, 4930527E24Rik, LOC626274, LOC625210, LOC100039055, LOC100039066, LOC676623, EG626315, LOC666268, LOC666097, LOC666107, LOC626348, LOC100039146, LOC100039160, EG630825, LOC100039187
Downstream geneLOC673263, 3830403N18Rik, LOC626439, Gm773, LOC100039254, LOC100039266, LOC100039276, 1600025M17Rik, Zfp449, LOC100039317, 6330419J24Rik, 6530403M18Rik, LOC100039346, Ddx26b, Gm648, Tmem32, Slc9a6, LOC100039342, Fhl1, Mtap7d3, Gpr112
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-545B22.T7 (MSMg01no545_b22.b1)MSMg01-545B22.TJ (MSMg01no545_b22.g1)
ACCAG610258AG610259
length746744
length of high quality
(start - end)		720 (25 - 744)609 (65 - 673)
definitionCHROMAT_FILE: MSMg01no545_b22.b1 PHD_FILE: MSMg01no545_b22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:26:01 2005CHROMAT_FILE: MSMg01no545_b22.g1 PHD_FILE: MSMg01no545_b22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:26:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGGAATTCATCT
TCTAAGTATACACTGTATGTTATGTATAGTATATCATAAAATACTAAATA
GGAATATCTAGCTATGTACACTGAATGTATACTGTGAGGAGCTGCCCTTT
CAATCTCCATTACAAGATGGCGCTGACATCCGTTGTTCTAACTGGTAAAG
AAATAGTCTATGTATGTGCTGGGGTATTTTTCCATTCTTTGTGCCCTTCC
TGTTCTGTGGCGTCATATGGGCTGATAGTGAGCAGCCCTTAGGGTGAAAT
ATGTCTCTAACACTTCTTGTGGTCTATTTAAGGACCGAGTTTCCTGTGTT
CTAAGCCTCCTCGCCCAAAAGCTAATCATCTTTCTCTTGAGATGGATTAA
AGCTATGCTGCAGAAGGATCTGAGTGTGACCTGTGTGTGTGTGTGTTATC
GACGGTGAGACTCTTTATCATCACAGACACAGTATACTGAATGCACAGAG
CATTAGTACTGTAACTCCATGGATAAATCATGTTCATGAAGCAACACTAA
CAGAGATTTACACACAATATTTGCATTTCATTTGTGTTCCCGAGATGAAA
ATTATTTTCATCAACACACATGGCACTGCATAGAACAGGTATGACTAATA
TTAAAATAGTAAAGAGCTGACTGCAAGAAGTATAGAAATCAGAGTTAGTA
AGTCTTTGGTGGAATACTATATTTACAAACTCACAACATCCATTAG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXAAGGCCCATACCTAAACATGATAAAAGCAATCTACA
GCAAACCAGTAGCCAACATCAAAGTAATTGGAGAGAAGCTGGAAGCAATC
CCACTAAAATCAGGGACTAGACAAGGCTGACCACTTTCTCCCTACCTTTT
CAACATAGTACTTGAAGTATTAGGCAGAAAAATTCGGCAACAAAAGGAGA
TCAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTCCA
GATGATATTATAGTATATATAAGTGACACTAAAAATTCCACCAGAGAACA
CCTAAACCTGATAAACAGCTTCGGTGAAGTAGCTGGATATAAAATTAACT
CAATCCAGTCAATGGCCTTTCTCTACACAAAGAATAAATAGGCTGAGAAA
GAAGTTAGGGAAACAACACCCTTCTCTATAGTCACAAATAATATAAAATA
TCTCGGCGTGACTCTAACTAAGAAAGTGAATGATCTGTATGATAAAAACT
TCAAGTCTCTGAAGAAAGAAATAAAAGAAGATCTCAGAAGATGGAAAGAT
CTCCCATGCTCATGGATTGGCAGGATCAACATTGTAAAAATGGCTATCTT
GCCAAAAGCAATCTACAGATTCAATGCAATCCCCATCAAAATTCCAACTC
AATTCTTCAACGGATTAGAAGGAGAAATTTGCAAATTCATCTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no545_b22.b1 MSMg01no545_b22.b1 CHROMAT_FILE:
MSMg01no545_b22.b1 PHD_FILE: MSMg01no545_b22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:01 2005
         (720 letters)



>mm_chrX_53240458_53241582
          Length = 1125

 Score =  273 bits (141), Expect = 4e-77
 Identities = 225/255 (88%), Gaps = 9/255 (3%)
 Strand = Plus / Minus

                                                                       
Query: 473 agagcattagtactgtaactccatggat-aaatcatgttcatgaagcaacact----aac 527
           ||||||||| |||||||||||||||||| ||| |||||| |||||||||||||    |||
Sbjct: 925 agagcattaatactgtaactccatggatgaaa-catgtttatgaagcaacacttagcaac 867

                                                                       
Query: 528 agagattt-acacacaatatttgcatttcatttgtgttcccgagatgaaaattattttca 586
           |||||||| |||||||||||||||||||||| |||| |||| |||||||| ||| || ||
Sbjct: 866 agagatttaacacacaatatttgcatttcatatgtggtccccagatgaaacttaattgca 807

                                                                       
Query: 587 tcaacacacatggcactgcatagaacaggtatgactaatattaaaatagtaaagagctga 646
           |||||| ||||| |||  ||| ||||||||||||||||||||||||||||||| ||||||
Sbjct: 806 tcaacaaacatgtcacaccatggaacaggtatgactaatattaaaatagtaaacagctga 747

                                                                       
Query: 647 ctgcaagaagtatagaaat-cagagttagtaagtctttggtggaatactatatttacaaa 705
            ||||||||||||  || | |||||||| |||||||||||||||||||||||||||||  
Sbjct: 746 atgcaagaagtattcaa-tacagagttactaagtctttggtggaatactatatttacatg 688

                          
Query: 706 ctcacaacatccatt 720
           |||||||||| ||||
Sbjct: 687 ctcacaacatacatt 673


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 720
Length of database: 1125
Length adjustment: 10
Effective length of query: 710
Effective length of database: 1115
Effective search space:   791650
Effective search space used:   791650
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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