BAC Information

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BAC

Clone NameB6Ng01-001G13
ChromosomeY (Build37)2 (Build37)
Map Location 573,321 - 573,358124,423,404 - 124,424,579
singlet/doubletsingletsinglet
Overlap geneUty
Upstream geneLOC100039202, Zfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps
Downstream geneDdx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-001G13.bB6Ng01-001G13.g
ACCDH839736DH839737
length2661,171
definitionDH839736|Mus musculus domesticus DNA, BAC clone: B6Ng01-001G13, 5' end.DH839737|Mus musculus domesticus DNA, BAC clone: B6Ng01-001G13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(573,321 - 573,358)(124,423,404 - 124,424,579)
sequence
tttgtttagctctgtacctcgttttttaatagggttatttgattttacag
agtccatcttctcgagttcctcatatacaatcaccaaacacagacaccat
tgcatatgccagcaagattttgctgaaaggaccctgatatagctgtctct
tgtgaggctatgtcagtgcctggcaaatacagaaatggatgctcacagtc
atctattggatggaacacagggcccccaatgaaggagctagagaaagtac
ccaaggagctaaaggg
gaattcttcttttccccagaatcttttaaactagtgctgtagggtagttt
gaaatttttcactgcagccctttatatcttcacaaaggggcgccgtaacg
taattacactaacactgaacttagagacttggaggttatgaaaggtttta
ttgcactgatgctttatatacagggaaaatcaggctctccgtgtagggtc
ttctttttgttcttttgaggagcaccatcctagtcttcatatgatctatg
aagtcttcatatgatagacttaaagatcttcatcacagatctttaagtct
atcctcacggaccttttgcttggtttactcttcaaaagggttcttttgtc
tatcataaattactacaatacttgtgtgcttattagattatagaagagag
cagttttcagggctggagagatggctcagtggttaagagcctggattgct
gttgcaaaggacccgagttcagtccacagcacccacatgaggcagctcac
acctataacccaagctccaggggatcagatcttctcttcctgtcttcttc
ggcacctatattcactcacatgcacacaaacagagaaagggagacaaaca
catttaatgaaaaaaatatttaaaagacaacaattttcatattattttat
gagctgctaacactgctagccccacttgtcctttcaaagacattattaca
atgtttgttaactttcataatttgattctgctttcttttcttattacatt
agctagcagctcaaaatcatattaaataataataccaactgattattaat
acctacagtttgttttctatttaaaaggagctgtttctgttcaattttga
ggtgaaaaggttggctgtgggaagtcatccttacacgagctttcattcgt
agacagaaccaagaggcatttaaaggcactgtgtgagtagaggtactttc
acactctggtaatctctgcagtatcacataactgcccattcagtagagtg
agctggggcagggttctgagaccagtgataagacccaggcaccttgttga
ctaacacctcattactggaaactgttccaaggcagtcaaaaagacaacct
caccgagactgtagtgcttaagcgggtagagaggaggatggccagcctgt
tgtatcagttaacaatacacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_573321_573358
seq2: B6Ng01-001G13.b_278_315

seq1  ATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGG  38
      ||| ||||||||||||||||||||||||||||||||||
seq2  ATGAAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGG  38

seq1: chr2_124423404_124424579
seq2: B6Ng01-001G13.g_66_1236

seq1  GAATTCTTCTTTTCCCCAGAATCTTTTAAACTAGTGCTGTAGGGTAGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTTTTCCCCAGAATCTTTTAAACTAGTGCTGTAGGGTAGTTT  50

seq1  GAAATTTTTCACTGCAGCCCTTTATATCTTCACAAAGGGGCGCCGTAACG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTTTTCACTGCAGCCCTTTATATCTTCACAAAGGGGCGCCGTAACG  100

seq1  TAATTACACTAACACTGAACTTAGAGACTTGGAGGTTATGAAAGGTTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTACACTAACACTGAACTTAGAGACTTGGAGGTTATGAAAGGTTTTA  150

seq1  TTGCACTGATGCTTTATATACAGGGAAAATCAGGCTCTCCGTGTAGGGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACTGATGCTTTATATACAGGGAAAATCAGGCTCTCCGTGTAGGGTC  200

seq1  TTCTTTTTGTTCTTTTGAGGAGCACCATCCTAGTCTTCATATGATCTATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTTGTTCTTTTGAGGAGCACCATCCTAGTCTTCATATGATCTATG  250

seq1  AAGTCTTCATATGATAGACTTAAAGATCTTCATCACAGATCTTTAAGTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTTCATATGATAGACTTAAAGATCTTCATCACAGATCTTTAAGTCT  300

seq1  ATCCTCACGGACCTTTTGCTTGGTTTACTCTTCAAAAGGGTTCTTTTGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCACGGACCTTTTGCTTGGTTTACTCTTCAAAAGGGTTCTTTTGTC  350

seq1  TATCATAAATTACTACAATACTTGTGTGCTTATTAGATTATAGAAGAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATAAATTACTACAATACTTGTGTGCTTATTAGATTATAGAAGAGAG  400

seq1  CAGTTTTCAGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCCTGGATTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTTCAGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCCTGGATTGCT  450

seq1  GTTGCAAAGGACCCGAGTTCAGTCCACAGCACCCACATGAGGCAGCTCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCAAAGGACCCGAGTTCAGTCCACAGCACCCACATGAGGCAGCTCAC  500

seq1  ACCTATAACCCAAGCTCCAGGGGATCAGATCTTCTCTTCCTGTCTTCTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATAACCCAAGCTCCAGGGGATCAGATCTTCTCTTCCTGTCTTCTTC  550

seq1  GGCACCTATATTCACTCACATGCACACAAACAGAGAAAGGGAGACAAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACCTATATTCACTCACATGCACACAAACAGAGAAAGGGAGACAAACA  600

seq1  CATTTAATGAAAAAAATATTTAAAAGACAACAATTTTCATATTATTTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAATGAAAAAAATATTTAAAAGACAACAATTTTCATATTATTTTAT  650

seq1  GAGCTGCTAACACTGCTAGCCCCACTTGTCCTTTCAAAGACATTATTACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGCTAACACTGCTAGCCCCACTTGTCCTTTCAAAGACATTATTACA  700

seq1  ATGTTTGTTAACTTTCATAATTTGATTCTGCTTTCTTTTCTTATTACATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTGTTAACTTTCATAATTTGATTCTGCTTTCTTTTCTTATTACATT  750

seq1  AGCTAGCAGCTCAAAATCATATTAAATAATAATACCAACTGATTATTAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGCAGCTCAAAATCATATTAAATAATAATACCAACTGATTATTAAT  800

seq1  ACCTACAGTTTGTTTTCTATTTAAAAGGAGCTG-TTCTGTTCAATTTTGA  849
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ACCTACAGTTTGTTTTCTATTTAAAAGGAGCTGTTTCTGTTCAATTTTGA  850

seq1  GGTGAAAAGGTTGGCTGTGGCAAGTCATCC-TACACGAGCTTTCATTCGT  898
      |||||||||||||||||||| ||||||||| |||||||||||||||||||
seq2  GGTGAAAAGGTTGGCTGTGGGAAGTCATCCTTACACGAGCTTTCATTCGT  900

seq1  AGACAGAACCAAGAGGCATTTAAAGGCACTGTGTGAGTAGAGGTACTTCC  948
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AGACAGAACCAAGAGGCATTTAAAGGCACTGTGTGAGTAGAGGTACTTTC  950

seq1  ACACTCCTGGTAATCTCTGCAGTATCACATAAACTGCCCATTCAGTAGGA  998
      ||||| |||||||||||||||||||||||| |||||||||||||||| ||
seq2  ACACT-CTGGTAATCTCTGCAGTATCACAT-AACTGCCCATTCAGTA-GA  997

seq1  GTGAGCTTGGGCAAGGTTCTGAGACCAGTGATAAGAACCAGGCACCCTGT  1048
      ||||||| ||||| |||||||||||||||||||||| ||||||||| |||
seq2  GTGAGCTGGGGCAGGGTTCTGAGACCAGTGATAAGACCCAGGCACCTTGT  1047

seq1  TGACTAACA-CTCATTACTGGAAACTGTCACAAGGCAGTCAAAAAAGACA  1097
      ||||||||| ||||||||||||||||||  |||||||||| |||||||||
seq2  TGACTAACACCTCATTACTGGAAACTGTTCCAAGGCAGTC-AAAAAGACA  1096

seq1  ACCCAACCGAAGACTGTAGGTGCTT-AGCGTGTAGAGAAGGAGGATGGCA  1146
      |||  |||| |||||||| |||||| |||| |||||| ||||||||||| 
seq2  ACCTCACCG-AGACTGTA-GTGCTTAAGCGGGTAGAG-AGGAGGATGGCC  1143

seq1  AGCCTGTTGTATACAGTTTAACAAAACACC  1176
      |||||||||||| ||| ||||||| |||||
seq2  AGCCTGTTGTAT-CAG-TTAACAATACACC  1171