BAC Information

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BAC

Clone NameB6Ng01-001P06
ChromosomeY (Build37)1 (Build37)
Map Location 573,321 - 573,39164,867,328 - 64,868,534
singlet/doubletsingletsinglet
Overlap geneUty
Upstream geneLOC100039202, Zfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps
Downstream geneDdx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-001P06.bB6Ng01-001P06.g
ACCDH840122DH840123
length5001,227
definitionDH840122|Mus musculus domesticus DNA, BAC clone: B6Ng01-001P06, 5' end.DH840123|Mus musculus domesticus DNA, BAC clone: B6Ng01-001P06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(573,321 - 573,391)(64,867,328 - 64,868,534)
sequence
gaattctcaactgaggagactgactgagaagcacctaaaaaaaatgttca
acatccttagtcatcagggaaatgtaagtcaaaacaaccctgagattcca
cctcacaccagtgagaatggctaagatttgcaaaacacatggaactcaag
aaggaagaccaaagagtggatacttcgctccttcttagaatggggaacaa
aatacccatggaaggagttacagagacaaagtttggagctaagatggaag
taaagaccatccagagactgccccacccagggatccatcccatatacaac
caccaaacccagacactattgcatatgccagaaagattttgctgacagga
ccctgatataactctctcttgtgaggctatgccaagtggatgctcacagt
caactattggatggaacacagggcccctaatggaggagctagggaaagta
ctcaaggagctgaagggatctgcaaccctataggaggaacaacaatatga

gaattccagcatggtgatgagcctcactcactgtgtgctcctcacaaggc
atgggccatccacgagactgctgatcccagcacgagccacggatctgcct
ctaatgcccccccctgcccccctcccgtcaccgtatgtgctggcctgcaa
atattgatgagtttggaactcatggcagtcacttattaactacattacta
atgcacttaactactgctcatgggcttcaaagacttcagcacctcacaca
gcaataacagtgagtctgccttttatttctgtaccgttaatgtctgctta
tatgggctgactttgatatcaggaaaaaaggtgaaattaacttagggact
gccataaataacaatagctacctgggtaccccccctttttttttcaaata
agtgcctagtttaaaatgacaattttacctccaactaacacctaacagag
acacagtaagacttcgagaaaagtaatctgtcctttattgaaaaaaaatg
aggctacactagagatggaagtggagaagcattttaagccttaggaacaa
gaccatgatgctaacaacttcagcaactgttaacttgggcgggaggaaca
agtcagatagatcagctgctgctctgtattactgtgggtctttgactttg
atagtagggaatgtatattattttgcactgaaatacaaaaagtgaatata
aaatcaagtttactgcttttcagagatagatcttttcctaacagggaggt
agagattacagtggctgttttctgagctaggccagcatgcagtcacatca
cttccctccataacctacagaaaagctgtaggtacactagacctgtttca
gttctgttctctcagggaccgttaacctccaacaccccaggaaggcacgc
accttacaccaacatctgatacaccgctgtctaggaaatatccaaccacc
caagctcttctacactgtgatagcaattctcctggagttgggcttccttt
ctcttacttaatcagtccacgattaatgactcatttaagaacgggctgag
gattttagaatggtctctgaaaccagggtgagtacaggttgtatgatgag
taccttgatctaaagggagttgacatcagtgactctgggttttttctcta
tctagtgaattttagtcagggcacaaaagtatggacgtttcgtaggctcc
ttaaaccattcatctagttgtggtatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_573321_573391
seq2: B6Ng01-001P06.b_476_546

seq1  ATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAAACCT  50
      ||||||||||||| |||||||| ||||||||| ||||||||||||| |||
seq2  ATGGAGGAGCTAGGGAAAGTACTCAAGGAGCTGAAGGGATCTGCAACCCT  50

seq1  ATAGATGGAACAACAATATGA  71
      ||||  |||||||||||||||
seq2  ATAGGAGGAACAACAATATGA  71

seq1: chr1_64867328_64868534
seq2: B6Ng01-001P06.g_71_1297

seq1  GAATTCCAGCATGGTGATGAGCCTCACTCACTGTGTGCTCCTCACAAGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGCATGGTGATGAGCCTCACTCACTGTGTGCTCCTCACAAGGC  50

seq1  ATGGGCCATCCACGAGACTGCTGATCCCAGCACGAGCCACGGATCTGCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCCATCCACGAGACTGCTGATCCCAGCACGAGCCACGGATCTGCCT  100

seq1  CTAATGCCCCCCCCTGCCCCCCTCCCGTCACCGTATGTGCTGGCCTGCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGCCCCCCCCTGCCCCCCTCCCGTCACCGTATGTGCTGGCCTGCAA  150

seq1  ATATTGATGAGTTTGGAACTCATGGCAGTCACTTATTAACTACATTACTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGATGAGTTTGGAACTCATGGCAGTCACTTATTAACTACATTACTA  200

seq1  ATGCACTTAACTACTGCTCATGGGCTTCAAAGACTTCAGCACCTCACACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACTTAACTACTGCTCATGGGCTTCAAAGACTTCAGCACCTCACACA  250

seq1  GCAATAACAGTGAGTCTGCCTTTTATTTCTGTACCGTTAATGTCTGCTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATAACAGTGAGTCTGCCTTTTATTTCTGTACCGTTAATGTCTGCTTA  300

seq1  TATGGGCTGACTTTGATATCAGGAAAAAAGGTGAAATTAACTTAGGGACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGCTGACTTTGATATCAGGAAAAAAGGTGAAATTAACTTAGGGACT  350

seq1  GCCATAAATAACAATAGCTACCTGGGTACCCCCCCTTTTTTTTTCAAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATAAATAACAATAGCTACCTGGGTACCCCCCCTTTTTTTTTCAAATA  400

seq1  AGTGCCTAGTTTAAAATGACAATTTTACCTCCAACTAACACCTAACAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCCTAGTTTAAAATGACAATTTTACCTCCAACTAACACCTAACAGAG  450

seq1  ACACAGTAAGACTTCGAGAAAAGTAATCTGTCCTTTATTGAAAAAAAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGTAAGACTTCGAGAAAAGTAATCTGTCCTTTATTGAAAAAAAATG  500

seq1  AGGCTACACTAGAGATGGAAGTGGAGAAGCATTTTAAGCCTTAGGAACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTACACTAGAGATGGAAGTGGAGAAGCATTTTAAGCCTTAGGAACAA  550

seq1  GACCATGATGCTAACAACTTCAGCAACTGTTAACTTGGGCGGGAGGAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATGATGCTAACAACTTCAGCAACTGTTAACTTGGGCGGGAGGAACA  600

seq1  AGTCAGATAGATCAGCTGCTGCTCTGTATTACTGTGGGTCTTTGACTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGATAGATCAGCTGCTGCTCTGTATTACTGTGGGTCTTTGACTTTG  650

seq1  ATAGTAGGGAATGTATATTATTTTGCACTGAAATACAAAAAGTGAATATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTAGGGAATGTATATTATTTTGCACTGAAATACAAAAAGTGAATATA  700

seq1  AAATCAAGTTTACTGCTTTTCAGAGATAGATCTTTTCCTAACAGGGAGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAAGTTTACTGCTTTTCAGAGATAGATCTTTTCCTAACAGGGAGGT  750

seq1  AGAGATTACAGTGGCTGTTTTCTGAGCTAGGCCAGCATGCAGTCACATCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATTACAGTGGCTGTTTTCTGAGCTAGGCCAGCATGCAGTCACATCA  800

seq1  CTTCCCTCCATAACCTACAG-AAAGCTGTAGGTACACTAGACCTGTTTCA  849
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CTTCCCTCCATAACCTACAGAAAAGCTGTAGGTACACTAGACCTGTTTCA  850

seq1  GTTCTGTTCTCTCAGGGACCGTTAA-CTCCAACAACCCCAGGAAGGCACG  898
      ||||||||||||||||||||||||| ||||||| ||||||||||||||||
seq2  GTTCTGTTCTCTCAGGGACCGTTAACCTCCAAC-ACCCCAGGAAGGCACG  899

seq1  CACCTAACACCAACATCTGATACA-CGCTGTCTAGGAAATATCCAACCA-  946
      ||||| |||||||||||||||||| |||||||||||||||||||||||| 
seq2  CACCTTACACCAACATCTGATACACCGCTGTCTAGGAAATATCCAACCAC  949

seq1  CCAAGCTCTTCTACACTGTGATAGCAATTCT-CTTGAGTTTGGCTTCCTT  995
      ||||||||||||||||||||||||||||||| || ||||| |||||||||
seq2  CCAAGCTCTTCTACACTGTGATAGCAATTCTCCTGGAGTTGGGCTTCCTT  999

seq1  TCTCTTACTTAATCAGT-CACGACTAATGACTCATTTAAAGAACGGGCTG  1044
      ||||||||||||||||| ||||| ||||||||||||| ||||||||||||
seq2  TCTCTTACTTAATCAGTCCACGATTAATGACTCATTT-AAGAACGGGCTG  1048

seq1  AGGA-TTTAGGATGG--TCTGAAAACCAGGTGAGTACAGGT--GATGA-G  1088
      |||| ||||| ||||  ||||||| |  |||||||||||||   |||| |
seq2  AGGATTTTAGAATGGTCTCTGAAACCAGGGTGAGTACAGGTTGTATGATG  1098

seq1  AAGACCTGGATCTAAAGGAGATTGAGCATCA-TGAC-CTAGG-TTTTTCT  1135
      |  |||| ||||||||||   |||| ||||| |||| || || |||||||
seq2  AGTACCTTGATCTAAAGGGAGTTGA-CATCAGTGACTCTGGGTTTTTTCT  1147

seq1  CTATCTA--GAATTT--ATCAGG--ACAAAAGTATGAACATTCTGAAGGC  1179
      |||||||  ||||||   |||||  ||||||||||| || ||  | ||||
seq2  CTATCTAGTGAATTTTAGTCAGGGCACAAAAGTATGGACGTTTCGTAGGC  1197

seq1  TCCTAAAACATTTCATCAAGT--TGGTATG  1207
      |||| ||||  |||||| |||  |||||||
seq2  TCCTTAAACCATTCATCTAGTTGTGGTATG  1227