BAC Information

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BAC

Clone NameB6Ng01-004C16
ChromosomeY (Build37)10 (Build37)
Map Location 1,120,578 - 1,121,07388,379,336 - 88,380,195
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneZfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278
Downstream geneEG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004C16.bB6Ng01-004C16.g
ACCDH841653DH841654
length643860
definitionDH841653|Mus musculus domesticus DNA, BAC clone: B6Ng01-004C16, 5' end.DH841654|Mus musculus domesticus DNA, BAC clone: B6Ng01-004C16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,120,578 - 1,121,073)(88,379,336 - 88,380,195)
sequence
gaattcttttttttttttttttttttttttaggtattttcctcgtttaca
ttttcaatgctatcccaaaggtcccccatacccacccccccaatccccta
cccacccactccccctttttagccctggctttcccctgtactggggcata
caaagtttgcaagtccaacgggcctctctttgcagtgatggctgactagg
ccatcttttgatacatatgcagctaaagacaagagctcccgggtactggt
tagttcatattgttgttccacctatagggttgcagttccctttagctcct
tgggtaatttctctagctcctccattaggggccgtgtgacccatccaata
gctgactgtgatcatccacttctgtgtttgctaagccccggcatagtctc
acaagaaagagctatatctgggtcctttcaacaaaatcttgctagtgtat
gcaatggtgtcagcatttggaagctgattatgggatggatccctgcatat
ggcaatcactagatggtccatcctttcgtcacagctccaaattttgtctc
tgtaactccttctatgggtgttttgttcccatttctaagaaagggtaaac
tgtccacactttggtcttcgttcttcttgaatttcatgcgttt
gaattcatttggatgaaggatccagtacacttctcctaatatactgtctg
attcattcattctgttctgcttggcttcttgctggacaagtcaccatgtc
gctgctctttcatggtcttaaaactgtaaactacacatgtttatggggca
taatatgtttgaatacatgtttgtatttcactatgttcaaatgtggttaa
gcatgtgtctcctcaagtgtttatgattttgtagtgatgaaaacattcag
aatcgctcactgtagctctgtagagacatgcagtccattatcactttcca
tcttcacagtcttgagcatcatgccatcataataattataaaattattgt
tcagtacccatgggacaactgtttgcttttagccgagtcttcaaactaga
cccttgattactatggttactaggttactaagagcatatgtatctttgag
cattatttgcattccctcatgattcatatttgcaactgtttttcagtctc
atggctttcgtatctctgtatcaaagaaaagattcagtcaccccaaaaga
ctttaaatctttctctacaccattggatcaattattttaaatctagttct
tttcaatctaactacacccatatcagatcagatcagaattgctcatggat
tttttcattatatatggccgttttgcagttcttatccaccatcttgtttg
gaggaatatttagagaccacgaaagcataaaagagtgttgtgatggatca
gaaaaaggctgagaatgggtgttttcatttatgcattcatagagatgccc
caatggtttcatgactctttttttttggtgtgtgtgtgtgtgtgtgtgtg
tatacatgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1120578_1121073
seq2: B6Ng01-004C16.b_49_537

seq1  TTTTTTAATTTTTTTTTCCATTTTTTATTAGGTATTTAACTCATTTACAT  50
      ||||||  |||||||||   |||||| ||||||||||  ||| |||||||
seq2  TTTTTT--TTTTTTTTT---TTTTTTTTTAGGTATTTTCCTCGTTTACAT  45

seq1  TTCCAATGCTATACCAAAAGTCCCCCATATCCACCCACCCCCACTCCCCT  100
      || ||||||||| ||||| |||||||||| |||||  |||||| ||||||
seq2  TTTCAATGCTATCCCAAAGGTCCCCCATACCCACC--CCCCCAATCCCCT  93

seq1  GCCCACCCACTCCCCCTTTTTGGCCCTGGTATTCCCCTGTACTGGGGCAT  150
       |||||||||||||||||||| |||||||  |||||||||||||||||||
seq2  ACCCACCCACTCCCCCTTTTTAGCCCTGGCTTTCCCCTGTACTGGGGCAT  143

seq1  ATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAG  200
      | ||||||||||||||||| |||||||||||| |||||||||| ||||||
seq2  ACAAAGTTTGCAAGTCCAACGGGCCTCTCTTTGCAGTGATGGCTGACTAG  193

seq1  GCCATCTTTTGATATATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGG  250
      |||||||||||||| ||||||||||| || |||||||||| |||||||||
seq2  GCCATCTTTTGATACATATGCAGCTAAAGACAAGAGCTCCCGGGTACTGG  243

seq1  TTAGCTCATAACGTTGTTCCACCTATAGGGTTGGAGATCCCTTTAGCTCC  300
      |||| |||||  ||||||||||||||||||||| || |||||||||||||
seq2  TTAGTTCATATTGTTGTTCCACCTATAGGGTTGCAGTTCCCTTTAGCTCC  293

seq1  TTGGCTACTTTCTCTAGCTCCTCCATTGGGAGCCCTATGATCCATCCATT  350
      |||| || ||||||||||||||||||| || ||| | ||| ||||||| |
seq2  TTGGGTAATTTCTCTAGCTCCTCCATTAGGGGCCGTGTGACCCATCCAAT  343

seq1  AGCTGACTGTGAGCATCCACTTCTGTGTTTGCTGGGCCCCGGCATAGTCT  400
      |||||||||||| ||||||||||||||||||||  |||||||||||||||
seq2  AGCTGACTGTGATCATCCACTTCTGTGTTTGCTAAGCCCCGGCATAGTCT  393

seq1  CACAAGAGACAGCTACATCTGCCTCCTTTCAATAAAATCTTGCTAGTGTA  450
      ||||||| | ||||| |||||  ||||||||| |||||||||||||||||
seq2  CACAAGAAAGAGCTATATCTGGGTCCTTTCAACAAAATCTTGCTAGTGTA  443

seq1  TGCAATGGTGTCAGCGTTTGGATGCTGATTATGGGGTGGATCCCTG  496
      ||||||||||||||| |||||| |||||||||||| ||||||||||
seq2  TGCAATGGTGTCAGCATTTGGAAGCTGATTATGGGATGGATCCCTG  489

seq1: chr10_88379336_88380195
seq2: B6Ng01-004C16.g_69_928

seq1  GAATTCATTTGGATGAAGGATCCAGTACACTTCTCCTAATATACTGTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTGGATGAAGGATCCAGTACACTTCTCCTAATATACTGTCTG  50

seq1  ATTCATTCATTCTGTTCTGCTTGGCTTCTTGCTGGACAAGTCACCATGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTCATTCTGTTCTGCTTGGCTTCTTGCTGGACAAGTCACCATGTC  100

seq1  GCTGCTCTTTCATGGTCTTAAAACTGTAAACTACACATGTTTATGGGGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTCTTTCATGGTCTTAAAACTGTAAACTACACATGTTTATGGGGCA  150

seq1  TAATATGTTTGAATACATGTTTGTATTTCACTATGTTCAAATGTGGTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATGTTTGAATACATGTTTGTATTTCACTATGTTCAAATGTGGTTAA  200

seq1  GCATGTGTCTCCTCAAGTGTTTATGATTTTGTAGTGATGAAAACATTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTGTCTCCTCAAGTGTTTATGATTTTGTAGTGATGAAAACATTCAG  250

seq1  AATCGCTCACTGTAGCTCTGTAGAGACATGCAGTCCATTATCACTTTCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCGCTCACTGTAGCTCTGTAGAGACATGCAGTCCATTATCACTTTCCA  300

seq1  TCTTCACAGTCTTGAGCATCATGCCATCATAATAATTATAAAATTATTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCACAGTCTTGAGCATCATGCCATCATAATAATTATAAAATTATTGT  350

seq1  TCAGTACCCATGGGACAACTGTTTGCTTTTAGCCGAGTCTTCAAACTAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTACCCATGGGACAACTGTTTGCTTTTAGCCGAGTCTTCAAACTAGA  400

seq1  CCCTTGATTACTATGGTTACTAGGTTACTAAGAGCATATGTATCTTTGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGATTACTATGGTTACTAGGTTACTAAGAGCATATGTATCTTTGAG  450

seq1  CATTATTTGCATTCCCTCATGATTCATATTTGCAACTGTTTTTCAGTCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATTTGCATTCCCTCATGATTCATATTTGCAACTGTTTTTCAGTCTC  500

seq1  ATGGCTTTCGTATCTCTGTATCAAAGAAAAGATTCAGTCACCCCAAAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTTTCGTATCTCTGTATCAAAGAAAAGATTCAGTCACCCCAAAAGA  550

seq1  CTTTAAATCTTTCTCTACACCATTGGATCAATTATTTTAAATCTAGTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAATCTTTCTCTACACCATTGGATCAATTATTTTAAATCTAGTTCT  600

seq1  TTTCAATCTAACTACACCCATATCAGATCAGATCAGAATTGCTCATGGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAATCTAACTACACCCATATCAGATCAGATCAGAATTGCTCATGGAT  650

seq1  TTTTTCATTATATATGGCCGTTTTGCAGTTCTTATCCACCATCTTGTTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCATTATATATGGCCGTTTTGCAGTTCTTATCCACCATCTTGTTTG  700

seq1  GAGGAATATTTAGAGACCACGAAAGCATAAAAGAGTGTTGTGATGGATCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAATATTTAGAGACCACGAAAGCATAAAAGAGTGTTGTGATGGATCA  750

seq1  GAAAAAGGCTGAGAATGGGTGTTTTCATTTATGCATTCATAGAGATGCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAGGCTGAGAATGGGTGTTTTCATTTATGCATTCATAGAGATGCCC  800

seq1  CAATGGTTTCATGACTCTTTTTTTTTGGTGTGTGTGTGTGTGTGTGTGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGTTTCATGACTCTTTTTTTTTGGTGTGTGTGTGTGTGTGTGTGTG  850

seq1  TATACATGTG  860
      ||||||||||
seq2  TATACATGTG  860