BAC Information

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BAC

Clone NameB6Ng01-004O19
ChromosomeY (Build37)3 (Build37)
Map Location 1,870,346 - 1,870,54658,919,056 - 58,920,207
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210
Downstream geneUbe1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004O19.bB6Ng01-004O19.g
ACCDH842205DH842206
length4801,149
definitionDH842205|Mus musculus domesticus DNA, BAC clone: B6Ng01-004O19, 5' end.DH842206|Mus musculus domesticus DNA, BAC clone: B6Ng01-004O19, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,870,346 - 1,870,546)(58,919,056 - 58,920,207)
sequence
tgcactttaataagacctcccttcttagaattgggaacaaaacacccatg
gaaggagttacaaagtttggagctgtgacaaaaggatggaccatctagag
actgccatatctagggatccaccccataatcagcttccaaacactgacac
cattgcatacactagcaagattttgctgaaaggacccagatatggctgtc
tcttgtgagactatgctggggcctaccaaacacagaagtggatgctcaca
gtcagctattggatggatcacagggctcccaatggaggagctagagaaag
tatccaaggagctaaagagatctgcaaccctgtaggtgcaacaacattat
gaactaacaagtaccccagagctcttgactctagctacatatgtatcaaa
agatggcctagtcggccatcactggaaagagaggcccattggacacacaa
actttatatgccccagtacagggccaaaaa
gaattctctcttccgaatcctggattctgttgacgaagcttgcctttgag
attcctgaacacggagaaatagagattaaaaaccccagaagagagaaagt
aaatgattcacaatcttgatgggttttgccgtatttatgttcttccactg
tattagataccagtcacaaatgacttagaggccataaactgtgctttaag
taactagcctgcctttctatccagatctttgcctccagaggtgagaagat
gaacaactccaccaccacagaccctccaaaccagccctgctcctggaaca
ccctgatcacaaagcagatcattcccgtgttgtacggtatggtcttcatc
acggggctcctcctcaatgggatatcaggatggatattcttttatgtgcc
cagctccaagagttttatcatctatctcaagaacatagtggtggctgact
ttctcatgggcctgactttccctttcaaagtccttggtgactcaggcctc
ggcccctggcaggtgaatgtgtttgtgtgcagggtctctgccgtcatctt
ctatgttaatatgtacgtcagcatcgtgttctttgggctcatcagctttg
acaggtactataaaattgtgaagccccttctgacgtctattgtgcagtcg
gtgaactatagcaagctgctttctgtgctcgtgtggatgctcatgcttct
ccttgctgtcccaaacatcatcctgacaaaccagggtgtcaaggaggtca
cgaagatacagtgcatggagctcaaaaacgagctggggcgggaagtggca
caaggcgtctactatatcttcgtgagtatcttctgggtcgtgtttctttc
tgctaatcgtcttctacacggccatcacgaggaggatcttcaagtctcac
ctcaagtccaggagatttccacctcccgtcaagaggaagtccagccgcat
atcttcagcatcgtgctcgtttttgtcgtctgcttgtgcctaccacattg
ccagaattccccttacacaagagtcagaccgtaggtccctacagctgccg
acgacagaccttgcttcttgcggaagaattcacctctgctacttctcgct
tgccaatggtgtgtctggacccattattaattctctctatgccagccat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1870346_1870546
seq2: B6Ng01-004O19.b_345_534

seq1  CTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGA  50
      |||||||||||| |||||||||||||| ||||||||||||| |||||| |
seq2  CTAGAGAAAGTATCCAAGGAGCTAAAGAGATCTGCAACCCTGTAGGTGCA  50

seq1  ACAACATTATGAACTAACCATTACCCCTGAGCTCTTGACTCTTGCTGCAT  100
      |||||||||||||||||| | |||||| |||||||||||||| ||| |||
seq2  ACAACATTATGAACTAACAAGTACCCCAGAGCTCTTGACTCTAGCTACAT  100

seq1  AGGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATT  150
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATT  150

seq1  GGACATGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCCAAAA  200
      |||||  |||||||||||||||||||||           |||||||||||
seq2  GGACACACAAACTTTATATGCCCCAGTA-----------CAGGGCCAAAA  189

seq1  A  201
      |
seq2  A  190

seq1: chr3_58919056_58920207
seq2: B6Ng01-004O19.g_70_1218 (reverse)

seq1  ATGGCTGGCATAAGAAGAAATAAATAATGGGGTCCAGACACA-CATTGGC  49
      ||||||||||| |||   ||| |||||| ||||||||||||| |||||||
seq2  ATGGCTGGCAT-AGAGAGAATTAATAAT-GGGTCCAGACACACCATTGGC  48

seq1  AGCCGAG-AGTAGCAGA-GTGAATTCTTTCGCATAGAGCAGGGTCTCCTT  97
      |  |||| ||||||||| |||||||||| ||||   |||| |||||   |
seq2  AAGCGAGAAGTAGCAGAGGTGAATTCTTCCGCAAGAAGCAAGGTCT--GT  96

seq1  CGTCCGGCAGCTGTAGTGACCTTCCGTCTGACTCTTTGTGTA--GGGGAT  145
      ||| |||||||||||| ||||| | ||||||||| |||||||  ||| ||
seq2  CGT-CGGCAGCTGTAGGGACCTACGGTCTGACTC-TTGTGTAAGGGGAAT  144

seq1  TCTGGCAATGTGGTAAGGCACAAAGCAGACGACAAAAACGAGCACGATGC  195
      |||||||||||||| |||||| ||||||||||||||||||||||||||||
seq2  TCTGGCAATGTGGT-AGGCAC-AAGCAGACGACAAAAACGAGCACGATGC  192

seq1  TGAAGATATTGCGGCTGGACTTCCTCTTGAC-GGAGGTGGAATTCTTCCT  244
      |||||||| |||||||||||||||||||||| |||||||||| || ||||
seq2  TGAAGATA-TGCGGCTGGACTTCCTCTTGACGGGAGGTGGAAATC-TCCT  240

seq1  GGACTTGAGGTGAGACTTGAAGATCTTCCTCGTGATGGCCGTGTAGAAGA  294
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GGACTTGAGGTGAGACTTGAAGATCCTCCTCGTGATGGCCGTGTAGAAGA  290

seq1  CGATTAGCAG-AAGAAACACGACCCAGAAGATACTCACGAAGATATAGTT  343
      |||||||||| ||||||||||||||||||||||||||||||||||||| |
seq2  CGATTAGCAGAAAGAAACACGACCCAGAAGATACTCACGAAGATATAG-T  339

seq1  AGACGCCTTGTGCCACTT-CCGCCCCAGCTCGTTTTTGAGCTCCATGCAC  392
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AGACGCCTTGTGCCACTTCCCGCCCCAGCTCGTTTTTGAGCTCCATGCAC  389

seq1  TGTATCTTCGTGACCTCCTTGACACCCTGGTTTGTCAGGATGATGTTTGG  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCTTCGTGACCTCCTTGACACCCTGGTTTGTCAGGATGATGTTTGG  439

seq1  GACAGCAAGGAGAAGCATGAGCATCCACACGAGCACAGAAAGCAGCTTGC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCAAGGAGAAGCATGAGCATCCACACGAGCACAGAAAGCAGCTTGC  489

seq1  TATAGTTCACCGACTGCACAATAGACGTCAGAAGGGGCTTCACAATTTTA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTTCACCGACTGCACAATAGACGTCAGAAGGGGCTTCACAATTTTA  539

seq1  TAGTACCTGTCAAAGCTGATGAGCCCAAAGAACACGATGCTGACGTACAT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTACCTGTCAAAGCTGATGAGCCCAAAGAACACGATGCTGACGTACAT  589

seq1  ATTAACATAGAAGATGACGGCAGAGACCCTGCACACAAACACATTCACCT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACATAGAAGATGACGGCAGAGACCCTGCACACAAACACATTCACCT  639

seq1  GCCAGGGGCCGAGGCCTGAGTCACCAAGGACTTTGAAAGGGAAAGTCAGG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGGGCCGAGGCCTGAGTCACCAAGGACTTTGAAAGGGAAAGTCAGG  689

seq1  CCCATGAGAAAGTCAGCCACCACTATGTTCTTGAGATAGATGATAAAACT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGAGAAAGTCAGCCACCACTATGTTCTTGAGATAGATGATAAAACT  739

seq1  CTTGGAGCTGGGCACATAAAAGAATATCCATCCTGATATCCCATTGAGGA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAGCTGGGCACATAAAAGAATATCCATCCTGATATCCCATTGAGGA  789

seq1  GGAGCCCCGTGATGAAGACCATACCGTACAACACGGGAATGATCTGCTTT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCCCGTGATGAAGACCATACCGTACAACACGGGAATGATCTGCTTT  839

seq1  GTGATCAGGGTGTTCCAGGAGCAGGGCTGGTTTGGAGGGTCTGTGGTGGT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATCAGGGTGTTCCAGGAGCAGGGCTGGTTTGGAGGGTCTGTGGTGGT  889

seq1  GGAGTTGTTCATCTTCTCACCTCTGGAGGCAAAGATCTGGATAGAAAGGC  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTGTTCATCTTCTCACCTCTGGAGGCAAAGATCTGGATAGAAAGGC  939

seq1  AGGCTAGTTACTTAAAGCACAGTTTATGGCCTCTAAGTCATTTGTGACTG  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTAGTTACTTAAAGCACAGTTTATGGCCTCTAAGTCATTTGTGACTG  989

seq1  GTATCTAATACAGTGGAAGAACATAAATACGGCAAAACCCATCAAGATTG  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTAATACAGTGGAAGAACATAAATACGGCAAAACCCATCAAGATTG  1039

seq1  TGAATCATTTACTTTCTCTCTTCTGGGGTTTTTAATCTCTATTTCTCCGT  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCATTTACTTTCTCTCTTCTGGGGTTTTTAATCTCTATTTCTCCGT  1089

seq1  GTTCAGGAATCTCAAAGGCAAGCTTCGTCAACAGAATCCAGGATTCGGAA  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGGAATCTCAAAGGCAAGCTTCGTCAACAGAATCCAGGATTCGGAA  1139

seq1  GAGAGAATTC  1152
      ||||||||||
seq2  GAGAGAATTC  1149