BAC Information

Click to search

BAC

Clone NameB6Ng01-010D09
ChromosomeY (Build37)
Map Location 1,870,346 - 1,870,574
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210
Downstream geneUbe1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-010D09.bB6Ng01-010D09.g
ACCDH845943DH845944
length3121,190
definitionDH845943|Mus musculus domesticus DNA, BAC clone: B6Ng01-010D09, 5' end.DH845944|Mus musculus domesticus DNA, BAC clone: B6Ng01-010D09, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
tttgtttagctctgagctccattttttaatggggttatttgattttctgg
aatccacctatcacagggcccgcaatggaggagctagagaaagtatccaa
ggagctaaagggatctgcaaccctgtaggtgcaacaacattatgaactaa
ccagtaccccggagctcttgactctagctgcatatgtatcaatagatggc
cttgtaggccatcactggaaagagaggcccattggacacgcaaactttat
atgccccagtacaggggaacgccagggccaaaaagtgggaatgggtggat
aggggagtgggg
gaattctattttcaattcaagaatttaaaaatcatattcctatgcttatc
atctgtctccatctcttttattctcctaggtcttacagaaccaactcatt
tcaaagaaacttaggtcagcattcctgaggtctacagcatgcccagtgtt
tgttttatgcatccataatatacttagattattttatcagtattccactc
tgttacagcctggcaccctctgatattctcaatgctttttaaaatttgca
tgcaataatgtgcacatttcatgctgtaaactcctatgcattttataaaa
tgtaaagcccaatggagtcactcaaatggaacatcttcactgccccaaga
aatttacatagtggatgttccttgctcagtgaaaactcaaaccagctgca
taattttgtaccttgaagaatgtgatggaattagaactcgacaacatatt
gccattgtgggatgaccttagcgatatgcatttaaggttaatcggtttat
gtgatttcattttgcatttcttttcatcagataattttctatcctatgaa
cttaaaatggtatattcattaatctactggtgtagtcactgataagttga
ttgatcacttcttttgttacaaattcatgtgacttaaaacacatctatga
taaacatgatgacatgaaattttgtggtgtatgttagtatatttttaata
ataagttttctttattataatttcatataggtacatatttaaatataaca
atttctatttttatatcctcttctaactccctgaatgtttcctcaccatg
tacctttaccaattttggaatattttagtttttttaattttatgtattta
ttgttttacatgtatgaatgtgtgcgtgtgcttgtaagcctgtgtacaat
tagtgtgcattgttcaaagaagccagcagaaggagtcacctttctaaaat
tgattacacatatttgttagcttctatgtgcatgctggaaatggacaggg
tctctgaatagtgatttaactgttagccatctctttcagccatttcccct
tcttgtgaaaactcatcaagctcagtaattgctgctttagtgcatatgtg
gtcattcacgagagacattccgaagaaagatcctccttgtcaattaagat
cacccgttcttaaggaacggatctatgtctggaattggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1870346_1870574
seq2: B6Ng01-010D09.b_137_365

seq1  CTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGA  50
      |||||||||||| |||||||||||||||||||||||||||| |||||| |
seq2  CTAGAGAAAGTATCCAAGGAGCTAAAGGGATCTGCAACCCTGTAGGTGCA  50

seq1  ACAACATTATGAACTAACCATTACCCCTGAGCTCTTGACTCTTGCTGCAT  100
      |||||||||||||||||||| |||||| |||||||||||||| |||||||
seq2  ACAACATTATGAACTAACCAGTACCCCGGAGCTCTTGACTCTAGCTGCAT  100

seq1  AGGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATT  150
      | ||||||| ||||||||| || |||||||||||||||||||||||||||
seq2  ATGTATCAATAGATGGCCTTGTAGGCCATCACTGGAAAGAGAGGCCCATT  150

seq1  GGACATGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCCAAAA  200
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCCAAAA  200

seq1  AGGGGCAGTGGGTGGGTAGGGGAGTGGGG  229
      || || | ||||||| |||||||||||||
seq2  AGTGGGAATGGGTGGATAGGGGAGTGGGG  229