BAC Information

Click to search

BAC

Clone NameB6Ng01-012O02
ChromosomeY (Build37)
Map Location 1,120,576 - 1,120,952
singlet/doubletsinglet
Overlap genenone
Upstream geneZfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278
Downstream geneEG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-012O02.bB6Ng01-012O02.g
ACCDH847841DH847842
length9741,193
definitionDH847841|Mus musculus domesticus DNA, BAC clone: B6Ng01-012O02, 5' end.DH847842|Mus musculus domesticus DNA, BAC clone: B6Ng01-012O02, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctcagggtgttttcgattttcatttccctgatgatcaaggatgtt
gaacatcttttcaggtgcttctcagccattcagtattccttagttgagaa
ttctttgtttagctctgtgccccattttttttctttttttttccattttt
tattaggtatttagctcatttacatttccaatgctataccaaaagtcccc
catacccacccacccccaatcccctacccacccactccccctttttggcc
ctggctttcccctgtactggggcatataaaattggcatgtccaatgggcc
tctctttccagtgatggccaagtaggccatcttttgatacatatgcagct
agagtcaagagctccggggtactggttagttcataatgttgttccaccta
tagggttgcagatccctttagctccttggctactttctctagctcctcca
ttgggagccctgtgatccatccattagctgactgtgagcatccacttctg
tgtttgctaggccccggcatagtctcacaagagacagctacatctgggtc
ctttcgataaaatcttgctagtgtatgcaatggtgtcagcgtttggatgc
tgattatggggtggatccctggatatggaagtctctacatggaccatcct
ttcatctcagctccaaactttgtctctgtaaatccttccaagggtgtttt
gttcccacttctaaggaggggcatagtgtccacacttcagtcttcatttt
tcttgaatttcatgtgtttaggaaattgtatcttatatcttgggtatcct
aggttttgggctaatatccacttatcaatgagtacatattgtgtgagttc
ctttgtgattgggttacctcactcaggatgatgccctccaggtccatcca
tttggctaggaatttcataaattcattctttttaatagctgagtagtact
ccatggtgtagatgtaccacattt
gaattctcacctgaggaataccgaatggctgagaagcacatgaaaaaatg
ttcaacatccttaatcatcagagaaatgcaaatcaaaacaaccctgagat
tccatctcactccagtcagaatggctaagataaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccgttgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggcagtttctca
gaaaattggacatagtactaccagaggatcccgcaatacctctcctaggc
atatatccagaaggtgttccaacctgtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacaaaaaatgtggtacatttaaacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagggaa
atggttggacctggagggcatcatcctgagtgaggtaacacaatcacaaa
agaactcaaatgatatgtactcactgataagtggatattagcccagaaac
ttagtatagcgagatataaggtacaatttgcaaaacacatgaaactgaag
aagaacgaagaccaaagtgtggacactttgccccttcttagaattggaaa
caatcacccatggaaggagttacagagacaaagtttggagctgagaaaaa
aggatgaaccatataaagactgccatatccagggatccatcccataatta
gcctccaaacggtgacaccattgcatacactagcaagcatttgctgcaag
gtccctgatatagctgtcttcttgtgagactaggccggggcctagcaaac
tcagaagtggatgctccacagtcagctattggatggatcacacgttcccc
caatggagaagctagagaaaggtattcaaggagctaaaggagatcttcaa
ctatgtagttgcaccattatgaagtaaccagtaccccggaagctcttgac
tctagctgctattgtatcaaaaaaagtgtagtcagcatcacttgaaagag
aagtccattgacaagggcaaactttatatggctccgatacaggaaatcgc
tcaggggcaaaaattgtggaaatggggctgggttaaggggacg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1120576_1120952
seq2: B6Ng01-012O02.b_165_540

seq1  TTTTTTTTAATTTTTTTTTCCATTTTTTATTAGGTATTTAACTCATTTAC  50
       |||||||  |||||||||||||||||||||||||||||| |||||||||
seq2  -TTTTTTTTCTTTTTTTTTCCATTTTTTATTAGGTATTTAGCTCATTTAC  49

seq1  ATTTCCAATGCTATACCAAAAGTCCCCCATATCCACCCACCCCCACTCCC  100
      ||||||||||||||||||||||||||||||| ||||||||||||| ||||
seq2  ATTTCCAATGCTATACCAAAAGTCCCCCATACCCACCCACCCCCAATCCC  99

seq1  CTGCCCACCCACTCCCCCTTTTTGGCCCTGGTATTCCCCTGTACTGGGGC  150
      || ||||||||||||||||||||||||||||  |||||||||||||||||
seq2  CTACCCACCCACTCCCCCTTTTTGGCCCTGGCTTTCCCCTGTACTGGGGC  149

seq1  ATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACT  200
      ||||||| || ||| ||||||||||||||||||||||||||||||| | |
seq2  ATATAAAATTGGCATGTCCAATGGGCCTCTCTTTCCAGTGATGGCCAAGT  199

seq1  AGGCCATCTTTTGATATATATGCAGCTAGAGTCAAGAGCTCCGGGGTACT  250
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AGGCCATCTTTTGATACATATGCAGCTAGAGTCAAGAGCTCCGGGGTACT  249

seq1  GGTTAGCTCATAACGTTGTTCCACCTATAGGGTTGGAGATCCCTTTAGCT  300
      |||||| |||||| ||||||||||||||||||||| ||||||||||||||
seq2  GGTTAGTTCATAATGTTGTTCCACCTATAGGGTTGCAGATCCCTTTAGCT  299

seq1  CCTTGGCTACTTTCTCTAGCTCCTCCATTGGGAGCCCTATGATCCATCCA  350
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CCTTGGCTACTTTCTCTAGCTCCTCCATTGGGAGCCCTGTGATCCATCCA  349

seq1  TTAGCTGACTGTGAGCATCCACTTCTG  377
      |||||||||||||||||||||||||||
seq2  TTAGCTGACTGTGAGCATCCACTTCTG  376