BAC Information

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BAC

Clone NameB6Ng01-014K15
ChromosomeY (Build37)
Map Location 368,320 - 369,461
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039202, Zfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y
Downstream geneTspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-014K15.g
ACCDH849143
length1,104
definitionDH849143|Mus musculus domesticus DNA, BAC clone: B6Ng01-014K15, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccagggagtttaaggaagtggtaaagcagctcatgtgggtgttag
taactgacctgctatcctctgccagagctgttcaagttctaaaccgctga
gccacctctcctgagtattcctgaatatttctgagacagaaaactaagcc
agaaggaaacagtgtatctaaatttgcacattaaactgtcagacctgaga
ctgaaggctgcatcctctaacttcaaatcagagcttttttttttccccca
gcctactacccaccctcagagctgagctttctattgtaagagggctgaga
gcttagactgaatcagcctgggcttcaaaaatgagccctgcatacttcag
tgagaagacagcatacaacaggtccttactgaaagtaatcacgcagcttg
ctgattagcaatcaagagttctctactttaaaaaaagttactcaattaaa
aatactggactgaatttagagctattagaagaagatcgtctgactttcca
agagttcattttgtttagccaggaaatttaaaacaggaaatcaccaagaa
aaatatgtaagtaacagtaaatgaataaatgaaataaagttgaaacttat
tcacctgggccacttactccagaccaaatactaaacttgatttcatctag
aaaatgaaaatatctgctaattccagttctgtcatttaactagttttgtg
acctcagaaaaattatttcacacctctgaggccaagtttcccagataata
aacttatcttaagtaagataatatgcaaaaatgcagctagctgttaggaa
tccctaagacacatggcagttttccctcatcttccacatcttacaggccc
tttaaggattgttctagttttatctttgaaccttcctctgctaggtctgc
atatcctgcccacagtttactgcccaggtatgatgatgggttctcaatta
ttggggtcagctttatatttggggactggtaaaatgtatccctgacctag
ttggatggtctgacatcgcattttctctcaatttctaatgctactagtag
gtctggtttctacttctggttataccagtggcttttcattaaaaaaagtc
cagg
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_368320_369461
seq2: B6Ng01-014K15.g_71_1174 (reverse)

seq1  CCTGGACTTTTTTTTTTAAATAGTAAAAGCACATGTTTATTAACAGATAG  50
      ||||||||||||||    |||   |||||| ||    ||| | |||  | 
seq2  CCTGGACTTTTTTT----AAT--GAAAAGC-CACTGGTATAACCAG--AA  41

seq1  GTAGAAAACCAGGACCTTTACTTAGTAAGCATTAGGAAATGTGAAGAGGA  100
      |||| |||||| ||||  ||| |||| |||||||| || ||   ||||  
seq2  GTAG-AAACCA-GACC--TAC-TAGT-AGCATTAGAAATTG---AGAG--  80

seq1  AAAAATGCAGATGCTCAGAACCCATCCAAAACCTAGGGTCAGGGATTACA  150
       ||||||| |||| |||||  ||||||||   ||| ||||||||| ||||
seq2  -AAAATGC-GATG-TCAGA--CCATCCAA---CTA-GGTCAGGGA-TACA  120

seq1  ATTTTAACAAGTCCCCAAATATAAAGCTGACCCACAATAATTTGAGAACC  200
        ||| || |||||||||||||||||||||||| |||||| |||||||||
seq2  --TTTTACCAGTCCCCAAATATAAAGCTGACCC-CAATAA-TTGAGAACC  166

seq1  CATTCATCATACCTGGGCAAGTAAACTGTGGGCAGGATAATGCAGACCTA  250
      || ||||||||||||||| ||||||||||||||||||| |||||||||||
seq2  CA-TCATCATACCTGGGC-AGTAAACTGTGGGCAGGAT-ATGCAGACCTA  213

seq1  GCAGAGGAAGGTTCAAAGATAAAACTAGAACAATCCTTAAAGGGCCTGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGGAAGGTTCAAAGATAAAACTAGAACAATCCTTAAAGGGCCTGTA  263

seq1  AGATGTGGAAGATGAGGGAAAACTGCCATGTGTCCTAAGGGATTCCTAAC  350
      ||||||||||||||||||||||||||||||||| || |||||||||||||
seq2  AGATGTGGAAGATGAGGGAAAACTGCCATGTGT-CTTAGGGATTCCTAAC  312

seq1  AGCTAGCTGCATTTTTGCATATTATCTTACTTAAGATAAGTTTATTATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGCTGCATTTTTGCATATTATCTTACTTAAGATAAGTTTATTATCT  362

seq1  GGGAAACTTGGCCTCAGAGGTGTGAAATAATTTTTCTGAGGTCACAAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAACTTGGCCTCAGAGGTGTGAAATAATTTTTCTGAGGTCACAAAAC  412

seq1  TAGTTAAATGACAGAACTGGAATTAGCAGATATTTTCATTTTCTAGATGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTAAATGACAGAACTGGAATTAGCAGATATTTTCATTTTCTAGATGA  462

seq1  AATCAAGTTTAGTATTTGGTCTGGAGTAAGTGGCCCAGGTGAATAAGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAGTTTAGTATTTGGTCTGGAGTAAGTGGCCCAGGTGAATAAGTTT  512

seq1  CAACTTTATTTCATTTATTCATTTACTGTTACTTACATATTTTTCTTGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTTATTTCATTTATTCATTTACTGTTACTTACATATTTTTCTTGGT  562

seq1  GATTTCCTGTTTTAAATTTCCTGGCTAAACAAAATGAACTCTTGGAAAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCCTGTTTTAAATTTCCTGGCTAAACAAAATGAACTCTTGGAAAGT  612

seq1  CAGACGATCTTCTTCTAATAGCTCTAAATTCAGTCCAGTATTTTTAATTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACGATCTTCTTCTAATAGCTCTAAATTCAGTCCAGTATTTTTAATTG  662

seq1  AGTAACTTTTTTTAAAGTAGAGAACTCTTGATTGCTAATCAGCAAGCTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACTTTTTTTAAAGTAGAGAACTCTTGATTGCTAATCAGCAAGCTGC  712

seq1  GTGATTACTTTCAGTAAGGACCTGTTGTATGCTGTCTTCTCACTGAAGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTACTTTCAGTAAGGACCTGTTGTATGCTGTCTTCTCACTGAAGTA  762

seq1  TGCAGGGCTCATTTTTGAAGCCCAGGCTGATTCAGTCTAAGCTCTCAGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGGCTCATTTTTGAAGCCCAGGCTGATTCAGTCTAAGCTCTCAGCC  812

seq1  CTCTTACAATAGAAAGCTCAGCTCTGAGGGTGGGTAGTAGGCTGGGGGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTACAATAGAAAGCTCAGCTCTGAGGGTGGGTAGTAGGCTGGGGGAA  862

seq1  AAAAAAAAGCTCTGATTTGAAGTTAGAGGATGCAGCCTTCAGTCTCAGGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAGCTCTGATTTGAAGTTAGAGGATGCAGCCTTCAGTCTCAGGT  912

seq1  CTGACAGTTTAATGTGCAAATTTAGATACACTGTTTCCTTCTGGCTTAGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACAGTTTAATGTGCAAATTTAGATACACTGTTTCCTTCTGGCTTAGT  962

seq1  TTTCTGTCTCAGAAATATTCAGGAATACTCAGGAGAGGTGGCTCAGCGGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTCTCAGAAATATTCAGGAATACTCAGGAGAGGTGGCTCAGCGGT  1012

seq1  TTAGAACTTGAACAGCTCTGGCAGAGGATAGCAGGTCAGTTACTAACACC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAACTTGAACAGCTCTGGCAGAGGATAGCAGGTCAGTTACTAACACC  1062

seq1  CACATGAGCTGCTTTACCACTTCCTTAAACTCCCTGGAATTC  1142
      ||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGAGCTGCTTTACCACTTCCTTAAACTCCCTGGAATTC  1104