BAC Information

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BAC

Clone NameB6Ng01-015D15
ChromosomeY (Build37)4 (Build37)
Map Location 1,870,358 - 1,870,41030,907,886 - 30,908,741
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210
Downstream geneUbe1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-015D15.bB6Ng01-015D15.g
ACCDH849543DH849544
length500857
definitionDH849543|Mus musculus domesticus DNA, BAC clone: B6Ng01-015D15, 5' end.DH849544|Mus musculus domesticus DNA, BAC clone: B6Ng01-015D15, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,870,358 - 1,870,410)(30,907,886 - 30,908,741)
sequence
gaattctttgtatatattggatattaatcccttatcagatttaggattag
taacaatcatttcccaatctgttgttggtgtcctttttgtcttattgaca
gtatcttttgcaaaacgcaagaaaatctagaagaggaaagaccaatgggt
ggatagttcattcctcctaagaatagggaacaacatacccatgaaaagag
ttacagagacaaagtttggagctaagacaaaaggacggactatcctgaga
ctaccccacccggggatccatcccataatcagccaccaaacccagacact
attgagtatgccagcaagattttgataaagggaccctggtatagctgtct
tgtatgaggctatgccagtccctggcaaatacagaagtggatgctcacag
tcatctataagatggaacacagggcccccagtggagagcttcagctcccc
aaggagctgaaggggtctgcaaccctataggtggaacaataatatgaact

gaattctaagacagccagtgcttcacagagaaaccctgccttaatataaa
gtcccaaaaccaacaacaaaaagatttacaaacaaaacagagaaaggaat
aagcttaacaattaaattatgactgattatgactaatagtgtgaaacaat
aacattttataatattcaaaaaggttaattttaatgacagctcttgaagc
atttagaatttgatggaaatggcaaatcaagaggttatgtcaaaatgggg
gaaccccaccgcacattgttgaagtccctgaataaataaccatccttccc
cagtattctccaattcttaaacaaaggtcccattcacgggttctgccttg
cctgtggtctacaggtacagaatatacagaagttgatatatacagatctt
agtccactggcaataaactggagagccattccattagcttcaaatccatg
tatcagaggagatttttacccactgcttttagacatcaattctgaagatg
ttttgtactaaattttcttttattctatagttcatttattgttagtgaga
cttacagtggctaatcattttcaattaatcaccaccctacttagtgagga
taatatttctctttaagctataattggctcctaccacatcctgaagtggg
caattctttctaagtagcatcattgactccaatttcttagtctgaacagg
atataggaataactctgattatttgagtttactgtgggcaaattactgga
tttattctctatttattattcctgaagcaaacataagaaggaagcccaca
tgttgatgtacatagagacactttttttctaatcttatgggatattatct
tgcttat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1870358_1870410
seq2: B6Ng01-015D15.b_492_544

seq1  CCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGAACAACATTATGA  50
      ||||||||||| ||||| |||||||||||||||||||||||| | |||||
seq2  CCCAAGGAGCTGAAGGGGTCTGCAACCCTATAGGTGGAACAATAATATGA  50

seq1  ACT  53
      |||
seq2  ACT  53

seq1: chr4_30907886_30908741
seq2: B6Ng01-015D15.g_72_928 (reverse)

seq1  ATAAGCAAGAATATTAT-CCAAAAGATTAG-AAAAAAGTGTCTCTATGTA  48
      ||||||||| ||| ||| ||| |||||||| |||||||||||||||||||
seq2  ATAAGCAAG-ATAATATCCCATAAGATTAGAAAAAAAGTGTCTCTATGTA  49

seq1  CATCAACCTGT-GGCTTCCTTCTTATGTTTTGCATCAGGAATACTAAATA  97
      ||||||| ||| ||||||||||||||| ||||| ||||||||| ||||||
seq2  CATCAACATGTGGGCTTCCTTCTTATG-TTTGCTTCAGGAATAATAAATA  98

seq1  GAGAATAAATCCAGTAATTTGCCCACAGTAAACTCAAATAATCAGAGTTA  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATAAATCCAGTAATTTGCCCACAGTAAACTCAAATAATCAGAGTTA  148

seq1  TTCCTATATCCTGTTCAGACTAAGAAATTGGAGTCAATGATGCTACTTAG  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTATATCCTGTTCAGACTAAGAAATTGGAGTCAATGATGCTACTTAG  198

seq1  AAAGAATTGCCCACTTCAGGATGTGGTAGGAGCCAATTATAGCTTAAAGA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATTGCCCACTTCAGGATGTGGTAGGAGCCAATTATAGCTTAAAGA  248

seq1  GAAATATTATCCTCACTAAGTAGGGTGGTGATTAATTGAAAATGATTAGC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATATTATCCTCACTAAGTAGGGTGGTGATTAATTGAAAATGATTAGC  298

seq1  CACTGTAAGTCTCACTAACAATAAATGAACTATAGAATAAAAGAAAATTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTAAGTCTCACTAACAATAAATGAACTATAGAATAAAAGAAAATTT  348

seq1  AGTACAAAACATCTTCAGAATTGATGTCTAAAAGCAGTGGGTAAAAATCT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACAAAACATCTTCAGAATTGATGTCTAAAAGCAGTGGGTAAAAATCT  398

seq1  CCTCTGATACATGGATTTGAAGCTAATGGAATGGCTCTCCAGTTTATTGC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGATACATGGATTTGAAGCTAATGGAATGGCTCTCCAGTTTATTGC  448

seq1  CAGTGGACTAAGATCTGTATATATCAACTTCTGTATATTCTGTACCTGTA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGACTAAGATCTGTATATATCAACTTCTGTATATTCTGTACCTGTA  498

seq1  GACCACAGGCAAGGCAGAACCCGTGAATGGGACCTTTGTTTAAGAATTGG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACAGGCAAGGCAGAACCCGTGAATGGGACCTTTGTTTAAGAATTGG  548

seq1  AGAATACTGGGGAAGGATGGTTATTTATTCAGGGACTTCAACAATGTGCG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATACTGGGGAAGGATGGTTATTTATTCAGGGACTTCAACAATGTGCG  598

seq1  GTGGGGTTCCCCCATTTTGACATAACCTCTTGATTTGCCATTTCCATCAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGTTCCCCCATTTTGACATAACCTCTTGATTTGCCATTTCCATCAA  648

seq1  ATTCTAAATGCTTCAAGAGCTGTCATTAAAATTAACCTTTTTGAATATTA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAAATGCTTCAAGAGCTGTCATTAAAATTAACCTTTTTGAATATTA  698

seq1  TAAAATGTTATTGTTTCACACTATTAGTCATAATCAGTCATAATTTAATT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGTTATTGTTTCACACTATTAGTCATAATCAGTCATAATTTAATT  748

seq1  GTTAAGCTTATTCCTTTCTCTGTTTTGTTTGTAAATCTTTTTGTTGTTGG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGCTTATTCCTTTCTCTGTTTTGTTTGTAAATCTTTTTGTTGTTGG  798

seq1  TTTTGGGACTTTATATTAAGGCAGGGTTTCTCTGTGAAGCACTGGCTGTC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGGACTTTATATTAAGGCAGGGTTTCTCTGTGAAGCACTGGCTGTC  848

seq1  TTAGAATTC  856
      |||||||||
seq2  TTAGAATTC  857