BAC Information

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BAC

Clone NameB6Ng01-015O21
Chromosome7 (Build37)Y (Build37)
Map Location 55,181,488 - 55,181,853573,444 - 573,649
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneUevld, C86187, LOC384623, ENSMUSG00000056509, Spty2d1, LOC100040174, Tmem86a, Ptpn5, LOC100041710, Mrgpra6, EG668725, Gm660, Mrgpra1, LOC668846, LOC100040217, LOC668727, Mrgpra2, LOC638950, Mrgprc4-ps, LOC677457, EG668729, Mrgpra3, Mrgprc1-ps, LOC100040314, Mrgprc3-ps, EG435977, EG619792, Mrgprc7-ps, Mrgpra18-ps, EG435978
Downstream geneMrgprc2-ps, Mrgpra4, Mrgprx1, Mrgprb7-ps, Mrgprb12-ps, EG270335, Mrgprb5, Mrgprb4, Mrgprb13, Mrgprb8, Mrgprb1, Mrgprx2, Mrgprb2, Mrgprb9-ps, Mrgprb3, EG639116, Zdhhc13, Csrp3, E2f8, LOC100040465
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-015O21.bB6Ng01-015O21.g
ACCDH850052DH850053
length366944
definitionDH850052|Mus musculus domesticus DNA, BAC clone: B6Ng01-015O21, 5' end.DH850053|Mus musculus domesticus DNA, BAC clone: B6Ng01-015O21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(55,181,488 - 55,181,853)(573,444 - 573,649)
sequence
taaaatgcagaaacacatgttcttccagtcatgcatttaataaaaagaaa
cacaggaagtgtgggtgtctctcatgtcaaccaagattgctttgtgacaa
tattattcattgaaagtgacagagtagtaaataactccctctgttagaga
ggcacaactaagaaattcatggtcacccacagagcaccacagactcccaa
gagatcctacaccttagaggaagaaagaaagctccaaataccagagtcca
gcatgaaaggatttcacaagaggaatagatgaacagttggaaactagtaa
gagtaatgtattaagtaaaccagaaagcttaaaagacaagtgtgtgtgtg
tgtgtgtgtgtgtgtg
gaattcacccattaaaaatcacagggtcacagaatgaatgcaaaagagga
ttcatccttccactacatacaaacaacacacctaatcatcaaagatagac
attacttaaaagtaaagagcaaggaaaagatttttgcaagcaaatggaca
taagaagcaagcaaatgtagtgattttattatttgacaaaagagacttca
gacaaaaattaatcaaaagaaacagaggatatttcatactcatcagatga
aaaatcctccaagatgatacttcaattttttccttattttattattattt
atttatttattttcaatttttattagatattatcttcatttatatttcaa
atgctatcctgaaagtcccctatatcctctcccattctctgctcccctac
ccacccactcccacttcctgaccctggtgttcccctgtactggggcatat
aaagtttgcaagaccaaggggcctctcttcacaatgatggccaactaggc
catcttctgctacatatgcagctagagacacgagctctgggggtactggt
tagttcatattgttgttccacatatagggttacagaccccttcagctcct
tgggtactttctctagctcctccattgggggccctgtgttccatccaata
gatgactgtggacatctactttctgtatttgccaggcactggcatagcct
cacacaagacagctatatcagggtcctttcaacaaaatcttgctggcatg
tgcaatagtgtctgtgtttggtggctgattatggggatggatctccgtgt
gcattttaatcctcaaacatattaataacagtattttgagaatcaaatat
tacttaaaaatgtccaacttctatattcatatcattccatacccgaaaat
accactaatgaatttttaatactatactaactgaagattctgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_55181488_55181853
seq2: B6Ng01-015O21.b_52_417

seq1  TAAAATGCAGAAACACATGTTCTTCCAGTCATGCATTTAATAAAAAGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGCAGAAACACATGTTCTTCCAGTCATGCATTTAATAAAAAGAAA  50

seq1  CACAGGAAGTGTGGGTGTCTCTCATGTCAACCAAGATTGCTTTGTGACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGAAGTGTGGGTGTCTCTCATGTCAACCAAGATTGCTTTGTGACAA  100

seq1  TATTATTCATTGAAAGTGACAGAGTAGTAAATAACTCCCTCTGTTAGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTCATTGAAAGTGACAGAGTAGTAAATAACTCCCTCTGTTAGAGA  150

seq1  GGCACAACTAAGAAATTCATGGTCACCCACAGAGCACCACAGACTCCCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACAACTAAGAAATTCATGGTCACCCACAGAGCACCACAGACTCCCAA  200

seq1  GAGATCCTACACCTTAGAGGAAGAAAGAAAGCTCCAAATACCAGAGTCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCCTACACCTTAGAGGAAGAAAGAAAGCTCCAAATACCAGAGTCCA  250

seq1  GCATGAAAGGATTTCACAAGAGGAATAGATGAACAGTTGGAAACTAGTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGAAAGGATTTCACAAGAGGAATAGATGAACAGTTGGAAACTAGTAA  300

seq1  GAGTAATGTATTAAGTAAACCAGAAAGCTTAAAAGACAAGTGTGTGTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAATGTATTAAGTAAACCAGAAAGCTTAAAAGACAAGTGTGTGTGTG  350

seq1  TGTGTGTGTGTGTGTG  366
      ||||||||||||||||
seq2  TGTGTGTGTGTGTGTG  366

seq1: chrY_573444_573649
seq2: B6Ng01-015O21.g_366_569 (reverse)

seq1  GGCCTAGTTGGCCATCATTGGGAAGAGAGGCCCCTTGGTCTTGCAAACTT  50
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GGCCTAGTTGGCCATCATTGTGAAGAGAGGCCCCTTGGTCTTGCAAACTT  50

seq1  TATATGCCCCAGTACAGGGGAACACCAGGGCCAAGAAGTGGGAGAAGGTG  100
      |||||||||||||||||||||||||||||| || ||||||||||  ||||
seq2  TATATGCCCCAGTACAGGGGAACACCAGGGTCAGGAAGTGGGAGTGGGTG  100

seq1  GGTAGGGTAGCA-AGGCAGGGGGAGGATATAGGGGACTTTTGGGATAGCA  149
      ||||||| |||| ||   ||| ||||||||||||||||||  ||||||||
seq2  GGTAGGGGAGCAGAGAATGGGAGAGGATATAGGGGACTTTCAGGATAGCA  150

seq1  TTTGAAATGTAAATGAAGAAAATAACTAATAAAAAATTTAAAATAAAATA  199
      |||||||| |||||||||| |||| ||||| ||||||| ||||||||   
seq2  TTTGAAATATAAATGAAGATAATATCTAAT-AAAAATTGAAAATAAA--T  197

seq1  AAATAAA  206
      |||||||
seq2  AAATAAA  204