BAC Information

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BAC

Clone NameB6Ng01-017A09
Chromosome2 (Build37)Y (Build37)
Map Location 144,779,040 - 144,779,2911,870,346 - 1,870,577
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneRrbp1, 4930517K23Rik, LOC627160, EG433481, Snx5, 8430406I07Rik, Ovol2, Ppia-ps2_1789.1, LOC635097, Csrp2bp, LOC100043552, 6330439K17Rik, Polr3f, Rbbp9, Sec23b, Gm561, Dtd1, 1700010M22Rik
Downstream geneSlc24a3, LOC627312, OTTMUSG00000015643, LOC433482, LOC100043810, Rin2, Nat5, Crnkl1, 4930529M08Rik, LOC100043563
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-017A09.bB6Ng01-017A09.g
ACCDH850821DH850822
length252446
definitionDH850821|Mus musculus domesticus DNA, BAC clone: B6Ng01-017A09, 5' end.DH850822|Mus musculus domesticus DNA, BAC clone: B6Ng01-017A09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(144,779,040 - 144,779,291)(1,870,346 - 1,870,577)
sequence
gaattctatccaaattcaagtctgaaagtcttgatgttccttctgttctt
tagttcttcaatgttattacccactgctttcctccttgtatggtttttga
caaaaagttgtaattatttttatttcttctttccttcttttctctgcctc
caaggtatcatttttcagcctaaacagttctctctgtttgtgcatgtcgg
agtggatctgtggtaatgtatatttgtgtgtttgtgtgtgtgtgtgtgtg
tg
ccgagtattaagtcctaatgacctaaaacatcatccattgggtttaatgt
actgtcttctccccatgcattcatttctctgcgaaatacagggaaaataa
tcaaagtacactctgtaggaccacacgctgttaagaattccggggcccag
caaacacagaagtggatgctcacagtcagctaatggatggatcatagggc
tcccaatggaggagctagagaaagtagccaaggagctaaagggatctgca
accctataggtggaacaacattatgagctaaccagtaccccggagctctt
gactctagctgcatatatatcaaaagatggcctagtcggccatcactgga
aagagaggcccattggacttgcaaactttatatgccccagtacaggggaa
taccagggccaaaaagggggagtgggtgggcaggggagtgggggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_144779040_144779291
seq2: B6Ng01-017A09.b_34_285

seq1  GAATTCTATCCAAATTCAAGTCTGAAAGTCTTGATGTTCCTTCTGTTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATCCAAATTCAAGTCTGAAAGTCTTGATGTTCCTTCTGTTCTT  50

seq1  TAGTTCTTCAATGTTATTACCCACTGCTTTCCTCCTTGTATGGTTTTTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCTTCAATGTTATTACCCACTGCTTTCCTCCTTGTATGGTTTTTGA  100

seq1  CAAAAAGTTGTAATTATTTTTATTTCTTCTTTCCTTCTTTTCTCTGCCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAGTTGTAATTATTTTTATTTCTTCTTTCCTTCTTTTCTCTGCCTC  150

seq1  CAAGGTATCATTTTTCAGCCTAAACAGTTCTCTCTGTTTGTGCATGTCGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTATCATTTTTCAGCCTAAACAGTTCTCTCTGTTTGTGCATGTCGG  200

seq1  AGTGGATCTGTGGTAATGTATATTTGTGTGTTTGTGTGTGTGTGTGTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGATCTGTGGTAATGTATATTTGTGTGTTTGTGTGTGTGTGTGTGTG  250

seq1  TG  252
      ||
seq2  TG  252

seq1: chrY_1870346_1870577
seq2: B6Ng01-017A09.g_275_506

seq1  CTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGA  50
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CTAGAGAAAGTAGCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGA  50

seq1  ACAACATTATGAACTAACCATTACCCCTGAGCTCTTGACTCTTGCTGCAT  100
      |||||||||||| ||||||| |||||| |||||||||||||| |||||||
seq2  ACAACATTATGAGCTAACCAGTACCCCGGAGCTCTTGACTCTAGCTGCAT  100

seq1  AGGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATT  150
      |  |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATT  150

seq1  GGACATGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCCAAAA  200
      |||| |||||||||||||||||||||||||||||||  ||||||||||||
seq2  GGACTTGCAAACTTTATATGCCCCAGTACAGGGGAATACCAGGGCCAAAA  200

seq1  AGGGGCAGTGGGTGGGTAGGGGAGTGGGGGTG  232
      ||||| |||||||||| |||||||||||||||
seq2  AGGGGGAGTGGGTGGGCAGGGGAGTGGGGGTG  232