BAC Information

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BAC

Clone NameB6Ng01-018F02
ChromosomeY (Build37)
Map Location 1,170,405 - 1,171,226
singlet/doubletsinglet
Overlap genenone
Upstream geneUbe1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278
Downstream geneEG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-018F02.bB6Ng01-018F02.g
ACCDH851754DH851755
length730821
definitionDH851754|Mus musculus domesticus DNA, BAC clone: B6Ng01-018F02, 5' end.DH851755|Mus musculus domesticus DNA, BAC clone: B6Ng01-018F02, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctatcacacaaacaagaatggttctctctcaaaacttttgaagca
tgggagattctttccatcttctgagatcttcaatttcttttttcagagac
ttgaaattcttgtcatatatatctttcacttgcttggttagagtcacatc
aaagtattttacattatttgtgatttttatataaggttgttgtttctcta
atttcttcctcagcctattgatcatttgattagaggaaggctactaattt
gtttgacttaattttacattcagcgactttgcttaagttgtttatcaggt
ttggagttctctggttgaagttttggggttacttaagtatacaatcatat
catctgcaaatagtgatattttgacttcttcttttccaatttgtaaccat
ttgactgttgtttattgtctaattactctggctagtacattgaataatat
aatgaataggtaggaagagagtgggcagccttgtccagttcctgaattta
gtgagattccttcaagtttctctccatttaatttgatgttgtctactggt
ctgctttatgttgcctttttctatgttcatgtatgggacttaaattcctg
atctttccaagacttttaccttgagggagttgaattttgtaaaatgcatt
ctcagcatttaatgagatgatcatgtgagttttttttttcatttcagtgt
gtctatatagtgggttatggtgatggattt
gaattccctgtgtctgttattatgtctccttgatttctgaatttccttgt
ttagaactgcaatattatctctgtagatctttacttttttgaatatgaag
tgtgcttctctgtctaatttgattaaacttggtggaaagtctattttatt
agatattagaatgactgatagagcttgcttcttgtgtcctttttcttgga
aaacttttttccaaccttttagttttgaatttcttatgtagcttccatac
tagttctaaataatatatagatggcaacggatattccccctattcattag
ggtatttctttaatatgtattcctttaccttgccatttacaattgccata
atttcatgcattctgattgtcaattcttgtcagtagtgaataaaaataaa
taaatagaaaagccttggctggttccagctttcagagccatatgaatgaa
aatataaataaaagtaaaaaggcatatctcttttaaggaattgtggaaaa
gaaggtgtattatagatagaagggaaaacatagccagagaaagtgctttc
ttggagagtctatagtgaacttgagaggaaaagtaggagaggaaaagaga
tccagaccaagaggctggggatgaagggtaaatagaaaaagccaaatgta
aaaaacattttgactacatagaagagggcagcaggaggaatggcagcata
cctcttgggctacttaaatttagattaagctgtaggatagattctataaa
aggtagggactaggaacctggaggctagatctgctttgttatataatgga
aacctgagtttctcattgctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1170405_1171226
seq2: B6Ng01-018F02.g_68_888

seq1  GAATTCCCTGTGTCTGTTATTATGTCTCCTTGATTTCTGAATTTCCTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTGTGTCTGTTATTATGTCTCCTTGATTTCTGAATTTCCTTGT  50

seq1  TTAGAACTGCAATATTATCTCTGTAGATCTTTACTTTTTTGAATATGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAACTGCAATATTATCTCTGTAGATCTTTACTTTTTTGAATATGAAG  100

seq1  TGTGCTTCTCTGTCTAATTTGATTAAACTTGGTGGAAAGTCTATTTTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTTCTCTGTCTAATTTGATTAAACTTGGTGGAAAGTCTATTTTATT  150

seq1  AGATATTAGAATGACTGATAGAGCTTGCTTCTTGTGTCCTTTTTCTTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATTAGAATGACTGATAGAGCTTGCTTCTTGTGTCCTTTTTCTTGGA  200

seq1  AAACTTTTTTCCAACCTTTTAGTTTTGAATTTCTTATGTAGCTTCCATAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTTTTTCCAACCTTTTAGTTTTGAATTTCTTATGTAGCTTCCATAC  250

seq1  TAGTTCTAAATAATATATAGATGGCAACGGATATTCCCCCTATTCATTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCTAAATAATATATAGATGGCAACGGATATTCCCCCTATTCATTAG  300

seq1  GGTATTTCTTTAATATGTATTCCTTTACCTTGCCATTTACAATTGCCATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTTCTTTAATATGTATTCCTTTACCTTGCCATTTACAATTGCCATA  350

seq1  ATTTCATGCATTCTGATTGTCAATTCTTGTCAGTAGTGAATAAAAATAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATGCATTCTGATTGTCAATTCTTGTCAGTAGTGAATAAAAATAAA  400

seq1  TAAATAGAAAAGCCTTGGCTGGTTCCAGCTTTCAGAGCCATATGAATGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAGAAAAGCCTTGGCTGGTTCCAGCTTTCAGAGCCATATGAATGAA  450

seq1  AATATAAATAAAAGTAAAAAGGCATATCTCTTTTAAGGAATTGTGGAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAAATAAAAGTAAAAAGGCATATCTCTTTTAAGGAATTGTGGAAAA  500

seq1  GAAGGTGTATTATAGATAGAAGGGAAAACATAGCCAGAGAAAGTGCTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTGTATTATAGATAGAAGGGAAAACATAGCCAGAGAAAGTGCTTTC  550

seq1  TTGGAGAGTCTATAGTGAACTTGAGAGGAAAAGTAGGAGAGGAAAAGAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGAGTCTATAGTGAACTTGAGAGGAAAAGTAGGAGAGGAAAAGAGA  600

seq1  TCCAGACCAAGAGGCTGGGGATGAAGGGTAAATAGAAAAAGCCAAATGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGACCAAGAGGCTGGGGATGAAGGGTAAATAGAAAAAGCCAAATGTA  650

seq1  AAAAACATTTTGACTACATAGAAGAGGGCAGCAGGAGGAATGGCAGCATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACATTTTGACTACATAGAAGAGGGCAGCAGGAGGAATGGCAGCATA  700

seq1  CCTCTTGGGCTACTTAAATTTAGATTAAGCTGTAGGATAGATTCTATAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTGGGCTACTTAAATTTAGATTAAGCTGTAGGATAGATTCTATAAA  750

seq1  AGGTAGGGACTAGGAACCTGGAGGCTAGATCTGCTTTGTTATATTAATGG  800
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AGGTAGGGACTAGGAACCTGGAGGCTAGATCTGCTTTGTTATA-TAATGG  799

seq1  AAACCTGAGTTTCTCATTGCTC  822
      ||||||||||||||||||||||
seq2  AAACCTGAGTTTCTCATTGCTC  821