BAC Information

Click to search

BAC

Clone NameB6Ng01-021C14
ChromosomeY (Build37)
Map Location 903,795 - 904,638
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039202, Zfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y
Downstream geneLOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-021C14.bB6Ng01-021C14.g
ACCDH853746DH853747
length84383
definitionDH853746|Mus musculus domesticus DNA, BAC clone: B6Ng01-021C14, 5' end.DH853747|Mus musculus domesticus DNA, BAC clone: B6Ng01-021C14, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttgtttacctctgtaccccttttgtgaatgggttatttaaatt
tctggagttcagcttattgagtttttttttttgtatatattggatattag
tccgctatcagattaataataggcctgcacgcctttaatcccaggacttg
gggggcagaggcaggtggatttctgagtttgaggccagcctggtttacaa
agtgagttgcaggacagcacagtctacacagagaaacctgttcacaaaca
aacaaacaaacaaacaaaacccaaccaacctaccaaccaaacaaaaaacg
aataagtaaaaatccttttccaatatgttggtgacctttttgtcttattg
actgtgtcttttgcattatagaaatgttgcaattttatgaggtcccattt
gttgattcttcatcttacagcacaagccattgctgttctgtttaggaatt
tttcccccagtgcctataccttcgaggtttttttttttttccccacatat
acataatttaaatttaatgaaataaatcttcaaatgaaacattttattct
gttcaggcagagtgatacatgcagaaaatcccagtactttgggagagatt
aaggaaagagggccagcactttgaagccaatctatgctatacgtcaattc
ctgtttctttcttatttttttaattaggtattttcctcctttaaattttc
aatgctatcccaaaagtcccccatacccaccccccaatatccttacccac
ccacttccccttatttggccctggggttcctctgtactggggcatataaa
gtttgcaagtccaatgggcccctctttccagtgatgccgacta
aggggaaactggtcagatgttgatgttgatgttgatgttgatgttgatgt
tgatgttgatgttgatgttgatgctgatcttca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_903795_904638
seq2: B6Ng01-021C14.b_45_887

seq1  GAATTCTTTGTTTACCTCTGTACCCCTTTTGTGAATGGGTTATTTAAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTTACCTCTGTACCCCTTTTGTGAATGGGTTATTTAAATT  50

seq1  TCTGGAGTTCAGCTTATTGAGTTTTTTTTTTTTTGTATATATTGGATATT  100
      |||||||||||||||||||||  |||||||||||||||||||||||||||
seq2  TCTGGAGTTCAGCTTATTGAG--TTTTTTTTTTTGTATATATTGGATATT  98

seq1  AGTCCGCTATCAGATTAATAATAGGCCTGCACGCCTTTAATCCCAGGACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCGCTATCAGATTAATAATAGGCCTGCACGCCTTTAATCCCAGGACT  148

seq1  TGGGGGGCAGAGGCAGGTGGATTTCTGAGTTTGAGGCCAGCCTGGTTTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGGCAGAGGCAGGTGGATTTCTGAGTTTGAGGCCAGCCTGGTTTAC  198

seq1  AAAGTGAGTTGCAGGACAGCACAGTCTACACAGAGAAACCTGTTCACAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGAGTTGCAGGACAGCACAGTCTACACAGAGAAACCTGTTCACAAA  248

seq1  CAAACAAACAAACAAACAAAACCCAACCAACCTACCAACCAAACAAAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAACAAACAAACAAAACCCAACCAACCTACCAACCAAACAAAAAA  298

seq1  CGAATAAGTAAAAATCCTTTTCCAATATGTTGGTGACCTTTTTGTCTTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAATAAGTAAAAATCCTTTTCCAATATGTTGGTGACCTTTTTGTCTTAT  348

seq1  TGACTGTGTCTTTTGCATTATAGAAATGTTGCAATTTTATGAGGTCCCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGTGTCTTTTGCATTATAGAAATGTTGCAATTTTATGAGGTCCCAT  398

seq1  TTGTTGATTCTTCATCTTACAGCACAAGCCATTGCTGTTCTGTTTAGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGATTCTTCATCTTACAGCACAAGCCATTGCTGTTCTGTTTAGGAA  448

seq1  TTTTTCCCCCAGTGCCTATACCTTCGAGGTTTTTTTTTTTTTTCCCCACA  500
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TTTTTCCCCCAGTGCCTATACCTTCGAGG-TTTTTTTTTTTTTCCCCACA  497

seq1  TATACATAATTTAAATTTAATGAAATAAATCTTCAAATGAAACATTTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACATAATTTAAATTTAATGAAATAAATCTTCAAATGAAACATTTTAT  547

seq1  TCTGTTCAGGCAGAGTGATACATGCAGAAAATCCCAGTAC-TTGGGAGAG  599
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TCTGTTCAGGCAGAGTGATACATGCAGAAAATCCCAGTACTTTGGGAGAG  597

seq1  ATTAAGGAAAGAGGGCCAGCACTTTGAAGCCAATCTATGCTATACGTCAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGGAAAGAGGGCCAGCACTTTGAAGCCAATCTATGCTATACGTCAA  647

seq1  TTCCTGTTTCTTTCTTATTTTTTTAATTAGGTATTTTCCTCCTTTAAATT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGTTTCTTTCTTATTTTTTTAATTAGGTATTTTCCTCCTTTAAATT  697

seq1  TTCAATGCTATCCCAAAAGTCCCCCATACCCACCCCCCAATA-CCCTACC  748
      |||||||||||||||||||||||||||||||||||||||||| || ||||
seq2  TTCAATGCTATCCCAAAAGTCCCCCATACCCACCCCCCAATATCCTTACC  747

seq1  CACCCACTTCCCCTT-TTTGGCCCTGGGGTTCCTCTGTACTGGGGCATAT  797
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CACCCACTTCCCCTTATTTGGCCCTGGGGTTCCTCTGTACTGGGGCATAT  797

seq1  AAAGTTTGCAAGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTA  844
      ||||||||||||||||||||||| |||||||||||||| ||||||||
seq2  AAAGTTTGCAAGTCCAATGGGCCCCTCTTTCCAGTGAT-GCCGACTA  843