BAC Information

Click to search

BAC

Clone NameB6Ng01-021M14
ChromosomeY (Build37)4 (Build37)
Map Location 1,870,346 - 1,870,40196,139,180 - 96,139,471
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210
Downstream geneUbe1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-021M14.bB6Ng01-021M14.g
ACCDH854195DH854196
length557292
definitionDH854195|Mus musculus domesticus DNA, BAC clone: B6Ng01-021M14, 5' end.DH854196|Mus musculus domesticus DNA, BAC clone: B6Ng01-021M14, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,870,346 - 1,870,401)(96,139,180 - 96,139,471)
sequence
gaattcattgttcttaatgctgagtagtattccagtgtgtaaatgttcca
cattttctgtatccattcctctgttgagagacatctgggttctttccagc
ttctggctattataaataaggctgctatgaacatcatggagcatgcatcc
ttattacaagttggaacatcttctgggtatatgcccaggaaaggaattgc
tggatcttctggaagtccaatttttcgatatgtccagttttctgaggaat
cgccagactaccccacccagggacccttcccatatacaaccaccaaaccc
agacattattgcatacgccagaaagatattgctgacaggaccatgacagc
tctttcttgtgagtctatgctaatgcctggaaaataccgaagtggatgct
cacagtcatctattggatggaacccagggcccctaatgaaggagctagag
aaagtacccaaggagctaaaggggtccgcaatcctataggaggaacaaca
atatgaactaactagtatccccaagaactgtgtctctagttgcatatgta
gcagagg
catagcataggctctagaacatcacatttatatgacatttatggtactca
ttttcgctttgcaacatgtatactaatcaagagattggaccatgatagat
gaaggacttaatacatgagttagaaaccaattcattgttggtgttcagtc
tatttggtatactctaatgctaaattctaggcctattaatgacttaatga
cttcacaccttttacaagcttttttttttgcaaccaatttatagaggtat
tagagggcagtggatttggaatgatgtggttggaggtggaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1870346_1870401
seq2: B6Ng01-021M14.b_487_542

seq1  CTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGA  50
      ||||||||||||||||||||||||||||| || |||| |||||||| |||
seq2  CTAGAGAAAGTACCCAAGGAGCTAAAGGGGTCCGCAATCCTATAGGAGGA  50

seq1  ACAACA  56
      ||||||
seq2  ACAACA  56

seq1: chr4_96139180_96139471
seq2: B6Ng01-021M14.g_75_366 (reverse)

seq1  TCTCCACCTCCAACCACATCATTCCAAATCCACTGCCCTCTAATACCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCACCTCCAACCACATCATTCCAAATCCACTGCCCTCTAATACCTCT  50

seq1  ATAAATTGGTTGCAAAAAAAAAAGCTTGTAAAAGGTGTGAAGTCATTAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATTGGTTGCAAAAAAAAAAGCTTGTAAAAGGTGTGAAGTCATTAAG  100

seq1  TCATTAATAGGCCTAGAATTTAGCATTAGAGTATACCAAATAGACTGAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTAATAGGCCTAGAATTTAGCATTAGAGTATACCAAATAGACTGAAC  150

seq1  ACCAACAATGAATTGGTTTCTAACTCATGTATTAAGTCCTTCATCTATCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACAATGAATTGGTTTCTAACTCATGTATTAAGTCCTTCATCTATCA  200

seq1  TGGTCCAATCTCTTGATTAGTATACATGTTGCAAAGCGAAAATGAGTACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCAATCTCTTGATTAGTATACATGTTGCAAAGCGAAAATGAGTACC  250

seq1  ATAAATGTCATATAAATGTGATGTTCTAGAGCCTATGCTATG  292
      ||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGTCATATAAATGTGATGTTCTAGAGCCTATGCTATG  292