BAC Information

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BAC

Clone NameB6Ng01-023C17
ChromosomeY (Build37)3 (Build37)
Map Location 1,870,346 - 1,870,54759,916,539 - 59,917,649
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210
Downstream geneUbe1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-023C17.bB6Ng01-023C17.g
ACCDH855163DH855164
length4821,102
definitionDH855163|Mus musculus domesticus DNA, BAC clone: B6Ng01-023C17, 5' end.DH855164|Mus musculus domesticus DNA, BAC clone: B6Ng01-023C17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,870,346 - 1,870,547)(59,916,539 - 59,917,649)
sequence
tatcccaggtggttcctgttagaccttctatgtttgtagtcctctttttt
gtgtaagaatccagtaacctctttgtaccttgtgggtgtgtcacccaact
tccttattttcttctgtataaagcctccaaacgatgtcaccattgcatac
actagcaagattttatcaaaaggaccctgatatagctgtctcttgtgaga
ctagggcggggcctagcaaaaacataagtggatgctcacagtcagctatt
ggatggatcacagggctcccaatggaggagctagagaaagtaaccaagga
gctaaagagatctgcaaccctgtaggtgcaacaacattatgaactaacca
gtaccctggagctcttgactctagctgcatatgtatcaaaagatggccta
gtaagccatcactggaaagagaggcccattggacatgcaaactttatatg
ccccagtacaggggaacgccagggccaaaaag
gaattcatctggacccactgagtcagcaagaacctttggaagtgaccggg
aaagtgtagtggtaatggggcttccagaacagtctaactcaggtagtgct
tgagcaatatgggtctggagataacactttgtaatatggcttggatgtgt
ctctaaacctcatgtgctaagtaacccaaaacacaagtatagtggggggc
acctttcaaaagtgacatgagaaagctgccctttgaatgaactaatgaca
gtattatcagagtaagttagttattatcagagaagggtcctgatcaaaag
ggggttcagcagcccccttcctgtccctactacacataatttcttgcctc
tttatctttttccacaggaaagtgaagatcaaaggccctcaacagatgta
tgcatttgggcccccagaactatttaaaataataataataataataataa
taataataataataacaacaacaacaacaaagaaggagctcatatacaat
gtcaggtattctttcacatcctggtgccctgtgtcagcatgagctgtctc
ctgtgtgaaaacatctggaagctctatgcttccttagattttttaaaaga
aggtcaatgagagccagctgtcctgtaattctcagaccagatcatgttga
aatatcagtgtcccaagagcagagtctgcaggcatcttttgagcaggggg
ctgaggtgagagagcagggcaggtagtgagactccattgagtctctggtc
atggcaagaatgaaaagaaacatctggcaacatactagtacagccatgca
gagtagcaaatccttaacctagtgtgtgtccagcatcccacatgttctcc
tgttaggacaaagagggactttattacaaaggatggaaacttagtccaga
attcttttatggagaacttaattgagagatgatgctaattcaccagcagt
catctttatccaggtcactagctgacttacagtaatggacatttggacta
ttttgtgcagtgtgaaacatctacacgtttctctgggcaatcttctggcc
agacagcacaagaggaatatttaaataacctccatggtccatgacaccac
tc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1870346_1870547
seq2: B6Ng01-023C17.b_330_531

seq1  CTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGA  50
      |||||||||||| |||||||||||||| ||||||||||||| |||||| |
seq2  CTAGAGAAAGTAACCAAGGAGCTAAAGAGATCTGCAACCCTGTAGGTGCA  50

seq1  ACAACATTATGAACTAACCATTACCCCTGAGCTCTTGACTCTTGCTGCAT  100
      |||||||||||||||||||| |||||  |||||||||||||| |||||||
seq2  ACAACATTATGAACTAACCAGTACCCTGGAGCTCTTGACTCTAGCTGCAT  100

seq1  AGGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATT  150
      | ||||||||||||||||||||  ||||||||||||||||||||||||||
seq2  ATGTATCAAAAGATGGCCTAGTAAGCCATCACTGGAAAGAGAGGCCCATT  150

seq1  GGACATGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCCAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCCAAAA  200

seq1  AG  202
      ||
seq2  AG  202

seq1: chr3_59916539_59917649
seq2: B6Ng01-023C17.g_70_1171 (reverse)

seq1  GAGTTGTGTCATGGACCCCATGGAGTTAATTTAAATATTTCCTCTTGTGC  50
      |||| ||||||||||  |||||||| | ||||||||| ||||||||||||
seq2  GAGTGGTGTCATGGA--CCATGGAGGTTATTTAAATA-TTCCTCTTGTGC  47

seq1  TGTTTTGCCATGAAGATTGCCCAGAGAAACGTGTAGATGTTTTCACACCT  100
      ||| | |||| |||||||||||||||||||||||||||| ||||||| ||
seq2  TGTCTGGCCA-GAAGATTGCCCAGAGAAACGTGTAGATG-TTTCACA-CT  94

seq1  GCACAAAATAGTCCAAATTGTCAATACTGTAAGTCAGCTAGTGACCTGGA  150
      ||||||||||||||||||   || ||||||||||||||||||||||||| 
seq2  GCACAAAATAGTCCAAATGTCCATTACTGTAAGTCAGCTAGTGACCTGG-  143

seq1  ATAAAGATGACTTGCTGGTGAATTAGCATCATCTTCTCAATTAAGTTCTC  200
      ||||||||||| ||||||||||||||||||||| ||||||||||||||||
seq2  ATAAAGATGAC-TGCTGGTGAATTAGCATCATC-TCTCAATTAAGTTCTC  191

seq1  CATAAAAGAATTCTGGACTAAGTTTCCATCCTTTGTAATAAAGTCCCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAAGAATTCTGGACTAAGTTTCCATCCTTTGTAATAAAGTCCCTCT  241

seq1  TTGTCCTAACAGGAGAACATGTGGGATGCTGGACACACACTAGGTTAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCTAACAGGAGAACATGTGGGATGCTGGACACACACTAGGTTAAGG  291

seq1  ATTTGCTACTCTGCATGGCTGTACTAGTATGTTGCCAGATGTTTCTTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCTACTCTGCATGGCTGTACTAGTATGTTGCCAGATGTTTCTTTTC  341

seq1  ATTCTTGCCATGACCAGAGACTCAATGGAGTCTCACTACCTGCCCTGCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTGCCATGACCAGAGACTCAATGGAGTCTCACTACCTGCCCTGCTC  391

seq1  TCTCACCTCAGCCCCCTGCTCAAAAGATGCCTGCAGACTCTGCTCTTGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACCTCAGCCCCCTGCTCAAAAGATGCCTGCAGACTCTGCTCTTGGG  441

seq1  ACACTGATATTTCAACATGATCTGGTCTGAGAATTACAGGACAGCTGGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGATATTTCAACATGATCTGGTCTGAGAATTACAGGACAGCTGGCT  491

seq1  CTCATTGACCTTCTTTTAAAAAATCTAAGGAAGCATAGAGCTTCCAGATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTGACCTTCTTTTAAAAAATCTAAGGAAGCATAGAGCTTCCAGATG  541

seq1  TTTTCACACAGGAGACAGCTCATGCTGACACAGGGCACCAGGATGTGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCACACAGGAGACAGCTCATGCTGACACAGGGCACCAGGATGTGAAA  591

seq1  GAATACCTGACATTGTATATGAGCTCCTTCTTTGTTGTTGTTGTTGTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATACCTGACATTGTATATGAGCTCCTTCTTTGTTGTTGTTGTTGTTAT  641

seq1  TATTATTATTATTATTATTATTATTATTATTATTTTAAATAGTTCTGGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTATTATTATTATTATTATTATTATTATTTTAAATAGTTCTGGGG  691

seq1  GCCCAAATGCATACATCTGTTGAGGGCCTTTGATCTTCACTTTCCTGTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAAATGCATACATCTGTTGAGGGCCTTTGATCTTCACTTTCCTGTGG  741

seq1  AAAAAGATAAAGAGGCAAGAAATTATGTGTAGTAGGGACAGGAAGGGGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGATAAAGAGGCAAGAAATTATGTGTAGTAGGGACAGGAAGGGGGC  791

seq1  TGCTGAACCCCCTTTTGATCAGGACCCTTCTCTGATAATAACTAACTTAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAACCCCCTTTTGATCAGGACCCTTCTCTGATAATAACTAACTTAC  841

seq1  TCTGATAATACTGTCATTAGTTCATTCAAAGGGCAGCTTTCTCATGTCAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATAATACTGTCATTAGTTCATTCAAAGGGCAGCTTTCTCATGTCAC  891

seq1  TTTTGAAAGGTGCCCCCCACTATACTTGTGTTTTGGGTTACTTAGCACAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAAAGGTGCCCCCCACTATACTTGTGTTTTGGGTTACTTAGCACAT  941

seq1  GAGGTTTAGAGACACATCCAAGCCATATTACAAAGTGTTATCTCCAGACC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTTAGAGACACATCCAAGCCATATTACAAAGTGTTATCTCCAGACC  991

seq1  CATATTGCTCAAGCACTACCTGAGTTAGACTGTTCTGGAAGCCCCATTAC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTGCTCAAGCACTACCTGAGTTAGACTGTTCTGGAAGCCCCATTAC  1041

seq1  CACTACACTTTCCCGGTCACTTCCAAAGGTTCTTGCTGACTCAGTGGGTC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTACACTTTCCCGGTCACTTCCAAAGGTTCTTGCTGACTCAGTGGGTC  1091

seq1  CAGATGAATTC  1111
      |||||||||||
seq2  CAGATGAATTC  1102