BAC Information

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BAC

Clone NameB6Ng01-023I19
Chromosome17 (Build37)Y (Build37)
Map Location 37,793,865 - 37,794,1791,870,497 - 1,870,571
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC620340, H2-M1, LOC667912, LOC100043158, LOC667915, H2-M10.5, H2-M10.6, Trim26, Trim15, Trim10, LOC100043164, Trim40, Trim31, Ppp1r11, Znrd1, 1700022C21Rik, H2-M6-ps, 2410137M14Rik, H2-M4-ps, D130003B22Rik, Zfp57, Mog, Gabbr1, Olfr90, Olfr91, Olfr92, EG224763, LOC667973, Olfr93, Olfr753-ps1, LOC630355, Ubd, Olfr94, Olfr95, Olfr96, Olfr97, Olfr754-ps1, Olfr98, H2-M3, Olfr755-ps1, Olfr99, Olfr756-ps1, Olfr101, Olfr102, Olfr103, Olfr104, GA_x5J8B7W5KGR-1115818-1115257, Olfr105, Olfr758-ps1, Olfr106, Olfr107, Olfr759-ps1, Olfr108, Olfr760-ps1, Olfr109, H2-M2, Olfr110, Olfr111, Olfr112, Olfr113, Olfr114, Olfr115, Olfr116
Downstream geneOlfr117, Olfr118, Olfr119, Scocp, Olfr120, Olfr1558-ps1, Olfr121, Olfr122, Olfr123, Olfr124, Olfr125, LOC672822, Olfr126, Olfr127, Olfr128, Ppia-ps17_697.1, Olfr761, Olfr1552-ps1, LOC100043265, Olfr129, Olfr130, Olfr131, Olfr132, Olfr133, Olfr134, Olfr135, Olfr138, Olfr137, Olfr762-ps1, Olfr136, LOC626985
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-023I19.bB6Ng01-023I19.g
ACCDH855438DH855439
length83389
definitionDH855438|Mus musculus domesticus DNA, BAC clone: B6Ng01-023I19, 5' end.DH855439|Mus musculus domesticus DNA, BAC clone: B6Ng01-023I19, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(37,793,865 - 37,794,179)(1,870,497 - 1,870,571)
sequence
gaattcttctatgtgagttcatactctgggaatctttattcatttacatc
agtgacttgcaaaaattgagagtataagaattgcctaatgagcctgctaa
aatctagatcagaaacctaactaaatattctgaataaaactggaagtcac
ccagataatcaaaaaactttgagcaattttccagatatcaccatcaagtg
ttaatcctcccttcacccacctttctacaatctccttcgttcttgagata
aaatcttgatcttcttcttaagacctctgtacttctgtatttgtcaggca
ctggtagaacctctcaggagacagctatatcggctcctgtcagcaaggtc
ttgttggcatccacaagagtgtctggctctggtggttgtctatgggatgg
atccccaggtggtgaagtctcaggatggtcattcctttagtctctgcttc
acactttgtccctgtatctccttccatgggtattttgttcccccttctaa
gaaggatcatagtatacacactttggccttcctttttcttgagtttcatg
tgttttacgaatttgtatctttgggtatttctgagctttctgggctaata
tccacttatcagtgagtgcatatcatgtgtgtttcttttgtgattgggtt
acctcactcaggattgatatcctccagatccatccattttgcctaagaat
ttcataaactcatttattttttaatagctgcgcatgtactccattgtaaa
aaatgtaccacatttcttgtatccattcctctatttgaggggctttgggt
tctttccagcttctggctatataaataagttag
agtggataaagtttgacacgcaaactttatatgccccagtacaggggaac
gccagggccaaaaagggggagtgggtgggtaggggagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_37793865_37794179
seq2: B6Ng01-023I19.b_350_856 (reverse)

seq1  CCAGAAGCTGGAAAGAACCCA----------------------GATGTAA  28
      |||||||||||||||||||||                      |||  ||
seq2  CCAGAAGCTGGAAAGAACCCAAAGCCCCTCAAATAGAGGAATGGATACAA  50

seq1  GGA----------------CCAAGGG----CCTCTCCCCCCATTGATGAC  58
      | |                 ||| ||    | |   |  | ||| |  | 
seq2  GAAATGTGGTACATTTTTTACAATGGAGTACATGCGCAGCTATTAAAAAA  100

seq1  TGAAT-AGGCTA------TCCTCTGCTACAT--ATGCAGCTAGAG-----  94
      | ||| ||  ||      || |  || | ||  ||| | || |||     
seq2  TAAATGAGTTTATGAAATTCTTAGGCAAAATGGATGGATCTGGAGGATAT  150

seq1  ---CCATGAGT--------CCTA---------------CCATG----GGT  114
          | |||||        || |                ||||    |  
seq2  CAATCCTGAGTGAGGTAACCCAATCACAAAAGAAACACACATGATATGCA  200

seq1  TTCTTTGATTGGT-CAT-TTAGACCCAGGGAGCTCTG---------GGGC  153
       ||  ||||  ||  || |||| |||||  ||||| |           | 
seq2  CTCACTGATAAGTGGATATTAG-CCCAGAAAGCTCAGAAATACCCAAAGA  249

seq1  TAC----TGGTTA------------TC---ATAAAGGTTTTTTTTTTTTT  184
      |||    | || |            ||   | |||||          | |
seq2  TACAAATTCGTAAAACACATGAAACTCAAGAAAAAGGAAGGCCAAAGTGT  299

seq1  TTTTTTTTTTTTTTTTTTT-------------------------------  203
       | |  | |  |  || ||                               
seq2  GTATACTATGATCCTTCTTAGAAGGGGGAACAAAATACCCATGGAAGGAG  349

seq1  ---------TTTTTTTTTTTTTTTTTTTTATGGGGCTGAAAACCC-----  239
                    | |           ||  ||  |||  | ||     
seq2  ATACAGGGACAAAGTGTGAAGCAGAGACTAAAGGAATGACCATCCTGAGA  399

seq1  CTTCAGCACCTTGGG----------TA-----------------------  256
      ||||| ||||| |||          ||                       
seq2  CTTCACCACCTGGGGATCCATCCCATAGACAACCACCAGAGCCAGACACT  449

seq1  ATTGCGGATGCCAATAAGAGCTTGCTGACAGGAGCCGGATAAAGCTGTCT  306
       ||| ||||||||| |||| |||||||||||||||| |||| ||||||||
seq2  CTTGTGGATGCCAACAAGACCTTGCTGACAGGAGCC-GATATAGCTGTCT  498

seq1  CCTGAGAGG  315
      |||||||||
seq2  CCTGAGAGG  507

seq1: chrY_1870497_1870571
seq2: B6Ng01-023I19.g_90_164

seq1  GACATGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCCAAAAA  50
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCCAAAAA  50

seq1  GGGGCAGTGGGTGGGTAGGGGAGTG  75
      |||| ||||||||||||||||||||
seq2  GGGGGAGTGGGTGGGTAGGGGAGTG  75