BAC Information

Click to search

BAC

Clone NameB6Ng01-024O04
ChromosomeY (Build37)8 (Build37)
Map Location 573,321 - 573,545104,179,360 - 104,180,479
singlet/doubletsingletsinglet
Overlap geneUty
Upstream geneLOC100039202, Zfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps
Downstream geneDdx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-024O04.bB6Ng01-024O04.g
ACCDH856390DH856391
length2931,107
definitionDH856390|Mus musculus domesticus DNA, BAC clone: B6Ng01-024O04, 5' end.DH856391|Mus musculus domesticus DNA, BAC clone: B6Ng01-024O04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(573,321 - 573,545)(104,179,360 - 104,180,479)
sequence
tgatgggctagcaaacacagaactggttgctcacagtcagctattggatg
gaccacagggcccccaatggaggagctagagaaagaacccaaggaactaa
agggatctgcaaccctataggtggaacaacaatatgaactaaccagtacc
ccccagagctcatgtctctagctgcatatgtgtcagaagatggcctagtc
ggccatcagttgaaagagaggcccattggtagtgcaaactttatatgcct
cagtacaggggaacgacaggtccaagaagtgggagtgggtggg
gaattcataaatgacatgagagttatcatcagtctgcacagttgcttatc
agacattatagctggcttctagctggtccagcctcttagaatacttacag
tgtttaagatcacagaggaagtttgttttatttaccattaaaaagctcag
ttggccaaacatcagcctgagaggctgaatgctatattattgaccatacc
actgttaacaagagtataaattatgagctcaaagagaagaaaatggataa
atgttacatccttagagaaagaatatctagttaacatttgagttatatct
tgtaaagatagttaattttattttgaaatatctatcataaatagaaatat
gcaacatatgtatatattttatttatgctgaaatttctactgctgcatac
attttttctccttttaccagcttccattccaagttctccttcccctcttc
tccctttcctaccttccattcttctctacctccttccttaaaaatatttg
agctgatggcagagtacctaataaatgttgcaggacttcacttctattta
agcatttataattttatctcacaatccagcaacttacactacatagttta
ccaagaattaggaaacgctttgcaatattttcctatatattatctgacaa
aattttctataatacattaacaaaagtatacgagttcccaattactaaat
atcctatttaggtactatttcagttaaaatttcttaaaaatatatctcaa
attcttgaggaatgtttaatttccctttcctaggatgaaatgatctattt
attattattattattattattattattattatattttaaccctatgtgtt
tgatgcccaggggccatgatgcccatgaggatgaccatcaaatcacttca
tggagttggttctctccttccaggtactgggtttgggaagtttgaactga
cacccagaaagataaagcaaatacttttatctactaagcatctacatgcc
tttatttactaataatactgctcctgttatttgtttaggtaagtttctat
tattgaagtgtagctgtctgggactgtctatgtagaacagaccttctaaa
ctctcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_573321_573545
seq2: B6Ng01-024O04.b_117_343

seq1  ATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAAACCT  50
      ||||||||||||||||||| ||||||||| |||||||||||||||| |||
seq2  ATGGAGGAGCTAGAGAAAGAACCCAAGGAACTAAAGGGATCTGCAACCCT  50

seq1  ATAGATGGAACAACAATATGAA-TAACCAGTA-TCCACAGAGCTCATGTC  98
      |||| ||||||||||||||||| |||||||||  || |||||||||||||
seq2  ATAGGTGGAACAACAATATGAACTAACCAGTACCCCCCAGAGCTCATGTC  100

seq1  TCTAGCTGCATATGTATCAGAAGATGGCCTAGTTGGCCATCATTGGGAAG  148
      ||||||||||||||| ||||||||||||||||| |||||||| | | |||
seq2  TCTAGCTGCATATGTGTCAGAAGATGGCCTAGTCGGCCATCAGTTGAAAG  150

seq1  AGAGGCCCCTTGGTCTTGCAAACTTTATATGCCCCAGTACAGGGGAACAC  198
      |||||||| |||||  ||||||||||||||||| ||||||||||||||  
seq2  AGAGGCCCATTGGTAGTGCAAACTTTATATGCCTCAGTACAGGGGAACGA  200

seq1  CAGGGCCAAGAAGTGGGAGAAGGTGGG  225
      |||| ||||||||||||||  ||||||
seq2  CAGGTCCAAGAAGTGGGAGTGGGTGGG  227

seq1: chr8_104179360_104180479
seq2: B6Ng01-024O04.g_67_1173

seq1  GAATTCATAAATGACATGAGAGTTATCATCAGTCTGCACAGTTGCTTATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAAATGACATGAGAGTTATCATCAGTCTGCACAGTTGCTTATC  50

seq1  AGACATTATAGCTGGCTTCTAGCTGGTCCAGCCTCTTAGAATACTTACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATTATAGCTGGCTTCTAGCTGGTCCAGCCTCTTAGAATACTTACAG  100

seq1  TGTTTAAGATCACAGAGGAAGTTTGTTTTATTTACCATTAAAAAGCTCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAAGATCACAGAGGAAGTTTGTTTTATTTACCATTAAAAAGCTCAG  150

seq1  TTGGCCAAACATCAGCCTGAGAGGCTGAATGCTATATTATTGACCATACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCAAACATCAGCCTGAGAGGCTGAATGCTATATTATTGACCATACC  200

seq1  ACTGTTAACAAGAGTATAAATTATGAGCTCAAAGAGAAGAAAATGGATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTAACAAGAGTATAAATTATGAGCTCAAAGAGAAGAAAATGGATAA  250

seq1  ATGTTACATCCTTAGAGAAAGAATATCTAGTTAACATTTGAGTTATATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTACATCCTTAGAGAAAGAATATCTAGTTAACATTTGAGTTATATCT  300

seq1  TGTAAAGATAGTTAATTTTATTTTGAAATATCTATCATAAATAGAAATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAGATAGTTAATTTTATTTTGAAATATCTATCATAAATAGAAATAT  350

seq1  GCAACATATGTATATATTTTATTTATGCTGAAATTTCTACTGCTGCATAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACATATGTATATATTTTATTTATGCTGAAATTTCTACTGCTGCATAC  400

seq1  ATTTTTTCTCCTTTTACCAGCTTCCATTCCAAGTTCTCCTTCCCCTCTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTCTCCTTTTACCAGCTTCCATTCCAAGTTCTCCTTCCCCTCTTC  450

seq1  TCCCTTTCCTACCTTCCATTCTTCTCTACCTCCTTCCTTAAAAATATTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTTCCTACCTTCCATTCTTCTCTACCTCCTTCCTTAAAAATATTTG  500

seq1  AGCTGATGGCAGAGTACCTAATAAATGTTGCAGGACTTCACTTCTATTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGATGGCAGAGTACCTAATAAATGTTGCAGGACTTCACTTCTATTTA  550

seq1  AGCATTTATAATTTTATCTCACAATCCAGCAACTTACACTACATAGTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTTATAATTTTATCTCACAATCCAGCAACTTACACTACATAGTTTA  600

seq1  CCAAGAATTAGGAAACGCTTTGCAATATTTTCCTATATATTATCTGACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGAATTAGGAAACGCTTTGCAATATTTTCCTATATATTATCTGACAA  650

seq1  AATTTTCTATAATACATTAACAAAAGTATACGAGTTCCCAATTACTAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTCTATAATACATTAACAAAAGTATACGAGTTCCCAATTACTAAAT  700

seq1  ATCCTATTTAGGTACTATTTCAGTTAAAATTTCTTAAAAATATATCTCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTATTTAGGTACTATTTCAGTTAAAATTTCTTAAAAATATATCTCAA  750

seq1  ATTCTTGAGGAATGTTTAATTTCCCTTTCCTAGGATGAAATGATCTATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTGAGGAATGTTTAATTTCCCTTTCCTAGGATGAAATGATCTATTT  800

seq1  ATTATTATTATTATTATTATTATTATTATTATATTTTTAACCCTATGTGT  850
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ATTATTATTATTATTATTATTATTATTATTATA-TTTTAACCCTATGTGT  849

seq1  TTGATGCCCAGGGGCCATGATGCCCATGAGGATGACCATCAAATCACTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGCCCAGGGGCCATGATGCCCATGAGGATGACCATCAAATCACTTC  899

seq1  ATGGAGTTGGTTCTCTCCTTCCAGGTACT-GGTTTGGGAAGTTTGAACTG  949
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ATGGAGTTGGTTCTCTCCTTCCAGGTACTGGGTTTGGGAAGTTTGAACTG  949

seq1  ACACCCCAGATAGATAAAGCAAATACTTTTATCTACTAAGCCATCCTACA  999
      ||| |||||| ||||||||||||||||||||||||||||| ||| |||||
seq2  ACA-CCCAGAAAGATAAAGCAAATACTTTTATCTACTAAG-CAT-CTACA  996

seq1  TGCCTTTATTTACTTAATTAATTACTGCTCCTTGTTTATTTGTTTAAGGT  1049
      ||||||||||||| ||||  | ||||||||||   |||||||||| ||||
seq2  TGCCTTTATTTAC-TAAT--AATACTGCTCCT--GTTATTTGTTT-AGGT  1040

seq1  AAGTTTCTATATTTGAAGTGTAGGCTGTCCTGGAACTGTCTATGTAGACC  1099
      ||||||||||  |||||||||| ||||| |||| |||||||||||||| |
seq2  AAGTTTCTATTATTGAAGTGTA-GCTGT-CTGGGACTGTCTATGTAGAAC  1088

seq1  AGACTTTCATAAAACTCTCAT  1120
      |||| |||   ||||||||||
seq2  AGACCTTC--TAAACTCTCAT  1107