BAC Information

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BAC

Clone NameB6Ng01-026C01
ChromosomeY (Build37)
Map Location 573,746 - 573,929
singlet/doubletsinglet
Overlap geneUty
Upstream geneLOC100039202, Zfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps
Downstream geneDdx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-026C01.bB6Ng01-026C01.g
ACCDH857261DH857262
length215735
definitionDH857261|Mus musculus domesticus DNA, BAC clone: B6Ng01-026C01, 5' end.DH857262|Mus musculus domesticus DNA, BAC clone: B6Ng01-026C01, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcacagggaaatcatcactcagggacttcaggtagaaaactagcca
gtcagcctctggatagacaaggctcaacagttcagagaaccaggccatcg
caaatagttcacagacctgcaaggaagacatgcagatccctgccccccac
cccacccctcccccagccccacccaaacatagggagaaaaggcagtgtgg
gggagggggaggtgc
gaattcagaaatcctcccatccctgcctccctaggactgggaataaaggc
ttgagccaccactcccgggtatatttaatttttttaatttttaaatttta
tttgttttatttatttttcttttttttcaagatgtggtttctctgtgtaa
ccctggctgtcctggaactcactctgtagaccaggctggccttgaaccat
taatctgaacgtttttgcttcccaaatgctgggattagaggcatgtgaca
ccactgcccggattaattttatttgtttgaaaataccttccttccttcct
ccttccttcctcccttttctttctttctttctttctttctttctttcttt
ctttctttctttctttctttcttttttctctctctctttctctctttcta
ttagttttttttttgttttgttttgtttttttggagatatggtttctcta
gtcctagctgacttgtaagccagggtgaccttgaaagcagaaatctgcct
tctttctttctttctttctttctttctttctttctttctttctttctttc
tttctttcttccaaaaatgctcagggacatcactctccctccagccagag
aagagtctcaggaaatgtatgtgagcttgctttgctttgttttgtggggc
caaatgtgacagacatttcttttggctttgtgtgttttgccagccagctc
tcttgctctgctcactcactcactcactcactcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_573746_573929
seq2: B6Ng01-026C01.g_137_567

seq1  TATATTTAATTAAGTTTATATAGTATGTAGTACATTCTCAAATTTTTAAA  50
      |||||||||||   ||| |                     ||||||||||
seq2  TATATTTAATT---TTTTT---------------------AATTTTTAAA  26

seq1  TTTTGTGAAAAACTCTATCACTTTTTTTTTTTTTTTTTTTTTGGTGTTTT  100
      ||||                 ||| |||| ||| ||||| ||  | ||||
seq2  TTTT----------------ATTTGTTTTATTTATTTTTCTT--TTTTTT  58

seq1  CGAGATAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTCTGT  150
      | ||||  ||||||||||| || |||||||||||||||||||||||||||
seq2  CAAGATGTGGTTTCTCTGTGTAACCCTGGCTGTCCTGGAACTCACTCTGT  108

seq1  AGACCAGGCTGGCCACGAACTCAGAAATCTG--CCT--------------  184
      ||||||||||||||  |||| ||  ||||||  | |              
seq2  AGACCAGGCTGGCCTTGAAC-CATTAATCTGAACGTTTTTGCTTCCCAAA  157

seq1  --------------------------------------------------  184
                                                        
seq2  TGCTGGGATTAGAGGCATGTGACACCACTGCCCGGATTAATTTTATTTGT  207

seq1  --------------------------------------------------  184
                                                        
seq2  TTGAAAATACCTTCCTTCCTTCCTCCTTCCTTCCTCCCTTTTCTTTCTTT  257

seq1  --------------------------------------------------  184
                                                        
seq2  CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTT  307

seq1  --------------------------------------------------  184
                                                        
seq2  TCTCTCTCTCTTTCTCTCTTTCTATTAGTTTTTTTTTTGTTTTGTTTTGT  357

seq1  --------------------------------------------------  184
                                                        
seq2  TTTTTTGGAGATATGGTTTCTCTAGTCCTAGCTGACTTGTAAGCCAGGGT  407

seq1  ------------------------  184
                              
seq2  GACCTTGAAAGCAGAAATCTGCCT  431