BAC Information

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BAC

Clone NameB6Ng01-029D03
Chromosome2 (Build37)Y (Build37)
Map Location 56,297,761 - 56,298,5751,870,346 - 1,870,505
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneKcnj3
Downstream geneLOC227920, Nr4a2, LOC100041900, LOC100042910, Gpd2, LOC271788
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-029D03.bB6Ng01-029D03.g
ACCDH859463DH859464
length865494
definitionDH859463|Mus musculus domesticus DNA, BAC clone: B6Ng01-029D03, 5' end.DH859464|Mus musculus domesticus DNA, BAC clone: B6Ng01-029D03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(56,297,761 - 56,298,575)(1,870,346 - 1,870,505)
sequence
gaattcccattatttgatctgaaaatttttcaaaatgctaagtaaagttt
tgggagttttttccttcagtaaaagactaaaatgagtgtatattttatgt
ggcagaagaaagtatccactgtacagcagcaaagaactcaagacatcatc
gtgtttgataaggaccctacagagtgataaaactttattctatagaccgg
tcttgtagctcacagaacctaacttatcacaggaccaaatttcagaaaga
tgacacagaacagttccagaaactttagtaaggacacaatatctgaaact
tatttttttctactaaatatttttattaaatattttctttacttacattt
caaaagctatcctgaaagttccctatactctccccaccacctttctcccc
aacccacccacttcagcttcctggccctagcattctcctgtactggggca
tataatcttcacaaaaccaagggcctctccttccattgatgacctactag
gcaatcctctgctacatttgcaacaagagacacaatttctggtgggggga
gggaggtattgattagttcatattgctgttcctcctatagggttgcagac
ccctttagctccttgggtactttctctagctccttcattggggtccctgt
gttccatccaatagatgactgtaaacatccacttctgtatttgccaggca
ctagcatagcctcacaagagacagctatatcaggatcctgtcaggaaaat
cttgctggcatatgcaatagtgtctggggtttggtggttgtttatgggat
ggatccctgggtggggcagtctctggatggtccttcctccatctcatctc
caaactttttctctg
tttgtttggctctgagccccattttttagtggggttatttgattttctgg
agtctaccttctttagttctttatacatattggatattagtcccctatct
gatttaggataggtaaagatcctttcccaatctgttggtggcctttttgt
cttattgacggtgtcttttgccttacagaagctttgcactttcatgaggt
tccatttgtcaattctcgatcttacagcacaagttattgctctcttgtga
gactatgccggggcctagcaaacacagaagtggatgctcacagtcagcta
ttggatggatcacggggcccccaatggaggagctagagaaagtacccaag
gagctaaagggaactgcaatcctatcggtggaacaacattatgaactaac
cactaccccctggagctcatgtctctagctgcatatgtatcaaaagatgg
cctagtcggccatcactggaaagagaggcccattggtcatgcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_56297761_56298575
seq2: B6Ng01-029D03.b_43_858

seq1  GAATTCCCATTATTTGATCTGAAAATTTTTCAAAATGCTAAGTAAAGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCATTATTTGATCTGAAAATTTTTCAAAATGCTAAGTAAAGTTT  50

seq1  TGGGAGTTTTTTCCTTCAGTAAAAGACTAAAATGAGTGTATATTTTATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGTTTTTTCCTTCAGTAAAAGACTAAAATGAGTGTATATTTTATGT  100

seq1  GGCAGAAGAAAGTATCCACTGTACAGCAGCAAAGAACTCAAGACATCATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAAGAAAGTATCCACTGTACAGCAGCAAAGAACTCAAGACATCATC  150

seq1  GTGTTTGATAAGGACCCTACAGAGTGATAAAACTTTATTCTATAGACCGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTGATAAGGACCCTACAGAGTGATAAAACTTTATTCTATAGACCGG  200

seq1  TCTTGTAGCTCACAGAACCTAACTTATCACAGGACCAAATTTCAGAAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTAGCTCACAGAACCTAACTTATCACAGGACCAAATTTCAGAAAGA  250

seq1  TGACACAGAACAGTTCCAGAAACTTTAGTAAGGACACAATATCTGAAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACAGAACAGTTCCAGAAACTTTAGTAAGGACACAATATCTGAAACT  300

seq1  TATTTTTTTCTACTAAATATTTTTATTAAATATTTTCTTTACTTACATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTTTCTACTAAATATTTTTATTAAATATTTTCTTTACTTACATTT  350

seq1  CAAAAGCTATCCTGAAAGTTCCCTATACTCTCCCCACCACCTTTCTCCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGCTATCCTGAAAGTTCCCTATACTCTCCCCACCACCTTTCTCCCC  400

seq1  AACCCACCCACTTCAGCTTCCTGGCCCTAGCATTCTCCTGTACTGGGGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCACCCACTTCAGCTTCCTGGCCCTAGCATTCTCCTGTACTGGGGCA  450

seq1  TATAATCTTCACAAAACCAAGGGCCTCTCCTTCCATTGATGACCTACTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATCTTCACAAAACCAAGGGCCTCTCCTTCCATTGATGACCTACTAG  500

seq1  GCAATCCTCTGCTACATTTGCAACAAGAGACACAATTTCTGGTGGGGGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATCCTCTGCTACATTTGCAACAAGAGACACAATTTCTGGTGGGGGGA  550

seq1  GGGAGGTATTGATTAGTTCATATTGCTGTTCCTCCTATAGGGTTGCAGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGTATTGATTAGTTCATATTGCTGTTCCTCCTATAGGGTTGCAGAC  600

seq1  CCCTTTAGCTCCTTGGGTACTTTCTCTAGCTCCTTCATTGGGGTCCCTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTAGCTCCTTGGGTACTTTCTCTAGCTCCTTCATTGGGGTCCCTGT  650

seq1  GTTCCATCCAATAGATGACTGTAAACATCCACTTCTGTATTTGCCAGGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCATCCAATAGATGACTGTAAACATCCACTTCTGTATTTGCCAGGCA  700

seq1  CTAGCATAGCCTCACAAGAGACAGCTATATCAGGATCCTGTCAGGAAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCATAGCCTCACAAGAGACAGCTATATCAGGATCCTGTCAGGAAAAT  750

seq1  CTTGCTGGCATATGCAATAGTGTCT-GGGTTTGGTGGTTGTTTATGGGAT  799
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CTTGCTGGCATATGCAATAGTGTCTGGGGTTTGGTGGTTGTTTATGGGAT  800

seq1  GGATCCCTGGGTGGGG  815
      ||||||||||||||||
seq2  GGATCCCTGGGTGGGG  816

seq1: chrY_1870346_1870505
seq2: B6Ng01-029D03.g_405_566

seq1  CTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGA  50
      |||||||||||||||||||||||||||||| |||||| ||||| ||||||
seq2  CTAGAGAAAGTACCCAAGGAGCTAAAGGGAACTGCAATCCTATCGGTGGA  50

seq1  ACAACATTATGAACTAACCATTACCCC--TGAGCTCTTGACTCTTGCTGC  98
      |||||||||||||||||||| ||||||   |||||| || |||| |||||
seq2  ACAACATTATGAACTAACCACTACCCCCTGGAGCTCATGTCTCTAGCTGC  100

seq1  ATAGGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCA  148
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCA  150

seq1  TTGGACATGCAA  160
      |||| |||||||
seq2  TTGGTCATGCAA  162