BAC Information

Click to search

BAC

Clone NameB6Ng01-029G02
Chromosome9 (Build37)Y (Build37)
Map Location 27,152,002 - 27,153,120573,322 - 573,504
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneB3gat1, BC038479, Glb1l3, Gm1110, LOC330907, Acad8, Thyn1, Vps26b, Ncapd3, Jam3, Igsf9b
Downstream geneSpata19, LOC666440, LOC100041202, Opcml
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-029G02.bB6Ng01-029G02.g
ACCDH859596DH859597
length1,111645
definitionDH859596|Mus musculus domesticus DNA, BAC clone: B6Ng01-029G02, 5' end.DH859597|Mus musculus domesticus DNA, BAC clone: B6Ng01-029G02, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(27,152,002 - 27,153,120)(573,322 - 573,504)
sequence
gaattcacagatctcaacgattacactgttttagtgaccagtctacaaat
gcttgctgtactgtgcctcgtggataccaggtggcactctaggtggcagg
aagcagagcttcactatgtctctcatctaccccaagcaatgacagacatc
acacgagacttcagtcttaagcgacagtcaggcctgcatacatcttccac
tgccagggccagtcctctgcctcatggcccttctagggatacagtgggag
ggtttgttttctagattatatatacttcacatggagggagacagaaagag
acaaactgtcaagtcctgaaagaaacagaaactggactcttaggtattgc
aagtgcaatcacaaagaaagacgaaatacaaatgtaccaatggcccggcc
ctgcttctgcgtcctcaagtgttactatctggcaggaaggagtcttcaat
caggattactcccccaggccgaatgaaaatggctaccatcaacaagaaca
gccagtgtagaaaccccgagctaagagggggtgtgagccactatgatggt
atagcctgtaacactcatacatggacgattgagacaataggattatgagt
ttaaggatagcctggggtatataatggactctgccttttaaaaaatgaaa
gaaaagaaggggagatataagaagagaagacaagacaagaaaagagaaaa
caagagaagaaaagagccaaacacagtatgccctagagagggtacagtta
tgtcaacagagtttaaaaacttcttgttgcaaggaaaagcttctacaaga
tttttgcgtgaaaatgtatgtatgtgtttgaacatatgtgtatataaaac
atgtatgtgggggaaaagagctgtaaaatttctacagctcactctggttg
ttttcctagaggttaagggtagaagcaagaggaaggagtgtttaagctca
gacatgctagtttcaggtcagtttgagcttcacagcagactcttgtctca
aacataaccaaatcatcttcggctttctgcctcgatatccccactcacag
attcatgcaactcagtcattctggaaggccagcgatcatgagtgatgtct
gtctctctagg
gaattctttgtttagctctgtgccccatttttaatggggtgatttgattt
ccttagaatagggaacaaaatacccatagaaggagttatagagacaaagt
ttggagctgagatgaaaggatggaccatccagagactgccctacccgggg
atccatcccataatcagacaccaaacccagacacaattgcatatgccagc
aagattttgctgagaggaccctgatatagctgtctcttgtgaggctatgc
cagtgcctggcaaatacagaagtggatgctcacagtcatctattggatgg
aacacagggcccccagtggagaagctagagaaagtacccaaggagctgaa
ggggtctacaaccctataggtggaacaacaatatgaactaaccagtactc
ccagagctcgtgtctctagctgcatatgtagcagaagatggcctagtcag
ccatcgttgggaagagaggccccttggtcttgcaaactttatatgccgca
gtacaggggaacaccagggccaagaagtgggagcaggtgggtaggggagc
agggtgcggggaggatataggggacttttcggtatagcatttgaaatgta
aataaagaaaatatctaataaaaaattggaaaaaaaagactgtcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_27152002_27153120
seq2: B6Ng01-029G02.b_41_1151 (reverse)

seq1  CCTAGAGAGACAGCATTCACTCATTGATCGCTTGGCCTTCAAGGATGGCT  50
      |||||||||||||   ||||||| ||||||| |||||||| || ||| ||
seq2  CCTAGAGAGACAGACATCACTCA-TGATCGC-TGGCCTTCCAGAATGACT  48

seq1  GGGTTGCAATGAGTCTGTGAGTGGGGATATCGAGGCAGGAAAGCCGAAGA  100
      | ||||| |||| |||||||||||||||||||||||| ||||||||||||
seq2  GAGTTGC-ATGAATCTGTGAGTGGGGATATCGAGGCA-GAAAGCCGAAGA  96

seq1  TGATTTTGTTATTGTTTGGAGACAAG-GTCTTGCTGTGTAGCTCAAACTG  149
      |||||| |||| ||||| |||||||| ||| ||||||| |||||||||||
seq2  TGATTTGGTTA-TGTTT-GAGACAAGAGTC-TGCTGTGAAGCTCAAACTG  143

seq1  ACCTGAAACTAGCCATGTCTGGGCTTAAACACTCCTTCCTCTTGCTTCTA  199
      |||||||||||| |||||||| ||||||||||||||||||||||||||||
seq2  ACCTGAAACTAG-CATGTCTGAGCTTAAACACTCCTTCCTCTTGCTTCTA  192

seq1  CCCCTTAACCTCTAGGAGAACAGCCAGAGTGAGCTGTAGAAATTTTACAG  249
       |||||||||||||||| |||| |||||||||||||||||||||||||||
seq2  -CCCTTAACCTCTAGGAAAACAACCAGAGTGAGCTGTAGAAATTTTACAG  241

seq1  CTCTTTTCCCCCACATACATG-TTTATATACACATATGTTCAAACACATA  298
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CTCTTTTCCCCCACATACATGTTTTATATACACATATGTTCAAACACATA  291

seq1  CATACATTTTCACGCAAAAATCTTGTAGAAGCTTTTCCTTGCAACAAGAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACATTTTCACGCAAAAATCTTGTAGAAGCTTTTCCTTGCAACAAGAA  341

seq1  GTTTTTAAACTCTGTTGGCATAACTGTTACCCTCTCTAGGGCATACTGTG  398
      ||||||||||||||||| |||||||| |||||||||||||||||||||||
seq2  GTTTTTAAACTCTGTTGACATAACTG-TACCCTCTCTAGGGCATACTGTG  390

seq1  TTTGGCTCTTTTCTTCTCTTGTTTTCTCTTTTCTTGTCTTGTCTTCTCTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCTCTTTTCTTCTCTTGTTTTCTCTTTTCTTGTCTTGTCTTCTCTT  440

seq1  CTTATATCTCCCCTTCTTTTCTTTCATTTTTTAAAAGGCAGAGTCCATTA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATATCTCCCCTTCTTTTCTTTCATTTTTTAAAAGGCAGAGTCCATTA  490

seq1  TATACCCCAGGCTATCCTTAAACTCATAATCCTATTGTCTCAATCGTCCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACCCCAGGCTATCCTTAAACTCATAATCCTATTGTCTCAATCGTCCA  540

seq1  TGTATGAGTGTTACAGGCTATACCATCATAGTGGCTCACACCCCCTCTTA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGAGTGTTACAGGCTATACCATCATAGTGGCTCACACCCCCTCTTA  590

seq1  GCTCGGGGTTTCTACACTGGCTGTTCTTGTTGATGGTAGCCATTTTCATT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCGGGGTTTCTACACTGGCTGTTCTTGTTGATGGTAGCCATTTTCATT  640

seq1  CGGCCTGGGGGAGTAATCCTGATTGAAGACTCCTTCCTGCCAGATAGTAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCCTGGGGGAGTAATCCTGATTGAAGACTCCTTCCTGCCAGATAGTAA  690

seq1  CACTTGAGGACGCAGAAGCAGGGCCGGGCCATTGGTACATTTGTATTTCG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGAGGACGCAGAAGCAGGGCCGGGCCATTGGTACATTTGTATTTCG  740

seq1  TCTTTCTTTGTGATTGCACTTGCAATACCTAAGAGTCCAGTTTCTGTTTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTTGTGATTGCACTTGCAATACCTAAGAGTCCAGTTTCTGTTTC  790

seq1  TTTCAGGACTTGACAGTTTGTCTCTTTCTGTCTCCCTCCATGTGAAGTAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGGACTTGACAGTTTGTCTCTTTCTGTCTCCCTCCATGTGAAGTAT  840

seq1  ATATAATCTAGAAAACAAACCCTCCCACTGTATCCCTAGAAGGGCCATGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAATCTAGAAAACAAACCCTCCCACTGTATCCCTAGAAGGGCCATGA  890

seq1  GGCAGAGGACTGGCCCTGGCAGTGGAAGATGTATGCAGGCCTGACTGTCG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGGACTGGCCCTGGCAGTGGAAGATGTATGCAGGCCTGACTGTCG  940

seq1  CTTAAGACTGAAGTCTCGTGTGATGTCTGTCATTGCTTGGGGTAGATGAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGACTGAAGTCTCGTGTGATGTCTGTCATTGCTTGGGGTAGATGAG  990

seq1  AGACATAGTGAAGCTCTGCTTCCTGCCACCTAGAGTGCCACCTGGTATCC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATAGTGAAGCTCTGCTTCCTGCCACCTAGAGTGCCACCTGGTATCC  1040

seq1  ACGAGGCACAGTACAGCAAGCATTTGTAGACTGGTCACTAAAACAGTGTA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGGCACAGTACAGCAAGCATTTGTAGACTGGTCACTAAAACAGTGTA  1090

seq1  ATCGTTGAGATCTGTGAATTC  1119
      |||||||||||||||||||||
seq2  ATCGTTGAGATCTGTGAATTC  1111

seq1: chrY_573322_573504
seq2: B6Ng01-029G02.g_387_570

seq1  TGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAAACCTA  50
      ||||| ||||||||||||||||||||||||| ||||| ||| ||| ||||
seq2  TGGAGAAGCTAGAGAAAGTACCCAAGGAGCTGAAGGGGTCTACAACCCTA  50

seq1  TAGATGGAACAACAATATGAA-TAACCAGTATCCACAGAGCTCATGTCTC  99
      ||| ||||||||||||||||| |||||||||  | |||||||| ||||||
seq2  TAGGTGGAACAACAATATGAACTAACCAGTACTCCCAGAGCTCGTGTCTC  100

seq1  TAGCTGCATATGTATCAGAAGATGGCCTAGTTGGCCATCATTGGGAAGAG  149
      |||||||||||||| ||||||||||||||||  |||||| ||||||||||
seq2  TAGCTGCATATGTAGCAGAAGATGGCCTAGTCAGCCATCGTTGGGAAGAG  150

seq1  AGGCCCCTTGGTCTTGCAAACTTTATATGCCCCA  183
      ||||||||||||||||||||||||||||||| ||
seq2  AGGCCCCTTGGTCTTGCAAACTTTATATGCCGCA  184