BAC Information

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BAC

Clone NameB6Ng01-030E21
Chromosome17 (Build37)Y (Build37)
Map Location 21,752,469 - 21,753,116573,321 - 573,358
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneFpr-rs3, EG433073, V1re2, V1re6, LOC100041976, V1re3, V1re1, V1re8, V1re7, V1re4, LOC627884, Ppp2r1a, V1rf5, Zfp160, LOC627912, LOC435509, EG627924, 4933430A09, EG665654, EG665662, LOC665666, EG665669, V1rf1, V1rf2, V1rf4, V1rf3, A830058L05Rik, Zfp54, Zfp51, Zfp53, LOC100042508, Zfp52, BC049807
Downstream geneZfp760, BC043476, 4930515G13Rik, 2610036F08Rik, LOC624960, 3110048L19Rik, 4930432O21Rik, LOC665820, LOC665825, LOC674332, LOC631010, EG665844, EG210853, LOC671007, EG240038, EG631624, 6330416L07Rik, Zfp758, 1300003B13Rik, EG210876, LOC100042656, EG628185
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-030E21.bB6Ng01-030E21.g
ACCDH860252DH860253
length1,075329
definitionDH860252|Mus musculus domesticus DNA, BAC clone: B6Ng01-030E21, 5' end.DH860253|Mus musculus domesticus DNA, BAC clone: B6Ng01-030E21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(21,752,469 - 21,753,116)(573,321 - 573,358)
sequence
gaattcattctgtcctaaaggtgaagaaacaaataagaacagcatttatc
ctgtgacccacaactagagacagaaaaagatctgtccagctcttcagtga
cctacacatgccctggctttatcccttttgtatactgtgcaatggagcct
aaacacaaagctgtgggctacagtacacacaattttgatcacatcttgtt
gttttccccgttctctatatctgtaatggtacctgttgcttgatatagaa
aaaaaaaaatgtgttaaggatgtgagttacttaagagatattgccaagct
ttctatgggttggattgaacttttctaactgagaatacttcttcggggat
ttgatgtgctaagggggtgggggtcattccaaatctccttgtaaatgacc
tcccccacataatcccatggacttggatggtgaaggaaccacaaggctca
acaaccagctgaggctgctgaagcagcaagaaactacaggaacctcacca
gaatttctttagcgagtctctctcattaccaccagcagagccaatacatg
catgttgttaacaaagaatagtgaggcagacagagcaaacaagtgctctc
actcccactctcactcccactgtctgtggggtcatatttgtcatgtgtcc
tttcatatgtttgctatagaaatacatcctttcacctgtgtgctccagca
aaacatcacttggaattacctgactttccaaagaaactagaagtttgcac
ttcaatccctgatgcagaaaattaggtatgttgttccaccctaaaaaagt
cagttataccatcccatctctagctctgggaacactgaggacgatatgtt
cagaaaataagaagggaaagagggggaaaggctaagacacaccattctct
aaactccatacaactactgtaatcagtaaccaacagtgaaagacccacag
cgtgaggacttcccccacactctgactcaggagagggtacaccctcaaat
cactcacgagaaaaggtcttgatgcaactgcaagagctaatttgggaaag
acagtgactgggggtgactcgatcc
gaattctttgtttttctctgtacctcgttttttaagggggttatttgatt
ttacagagtccttcttctcgagttcctcatatactatcaccaaacacaga
caccattgcatatgcctggagattttgctgaaaggaccctgatatagctg
tctcttgtgaggctatgtcagtgcctggcaaatacagaaatggaagctca
cagtcgtctattggatggaacacagggcccccaatgaaggagctagagaa
agtacccaaggagctaaaggggtcagcaaccctatacgagaatcaacaat
atgaactaaccagtaccccacaaaactgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_21752469_21753116
seq2: B6Ng01-030E21.b_474_1118 (reverse)

seq1  GGATACGAGTCACCCACAGTGCACTGGTCTTTCCCAAATTAAGCTCTTGC  50
      |||| |||||||||| |||| |||| |||||||||||||| |||||||||
seq2  GGAT-CGAGTCACCCCCAGT-CACT-GTCTTTCCCAAATT-AGCTCTTGC  46

seq1  AGTTTGCATCAAGACCATTTCTCGTGAGTGATTTG-GGGTGTCACCTCTC  99
      || ||||||||||||| |||||||||||||||||| ||||||  ||||||
seq2  AG-TTGCATCAAGACCTTTTCTCGTGAGTGATTTGAGGGTGTACCCTCTC  95

seq1  CTGAGTCAGAGTGTGGGGG-AGTCCTCACGCTGTGGGTCTTTCACTGTTG  148
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CTGAGTCAGAGTGTGGGGGAAGTCCTCACGCTGTGGGTCTTTCACTGTTG  145

seq1  GTTACTGATTACAGTAGTTGTATGGAGTTTAGAGAATGGTGTGTCTTAGC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTGATTACAGTAGTTGTATGGAGTTTAGAGAATGGTGTGTCTTAGC  195

seq1  CTTTCCCCCTCTTTCCCTTCTTATTTTCTGAACATATCGTCCTCAGTGTT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCCCCTCTTTCCCTTCTTATTTTCTGAACATATCGTCCTCAGTGTT  245

seq1  CCCAGAGCTAGAGATGGGATGGTATAACTGACTTTTTTAGGGTTGGAACA  298
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CCCAGAGCTAGAGATGGGATGGTATAACTGACTTTTTTAGGG-TGGAACA  294

seq1  ACATACCTTATTTTCTGCATCAGGGATTGAAGTGCAAACTTCTAGTTTCT  348
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ACATACCTAATTTTCTGCATCAGGGATTGAAGTGCAAACTTCTAGTTTCT  344

seq1  TTGGAAAGTCAGGTAATT-CAAGTGATGTTTTGCTGGAGCACACAGGTGA  397
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TTGGAAAGTCAGGTAATTCCAAGTGATGTTTTGCTGGAGCACACAGGTGA  394

seq1  AAGGATGTATTTCTATAGCAAACATATGAAAGGACACATGACAAATATGA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATGTATTTCTATAGCAAACATATGAAAGGACACATGACAAATATGA  444

seq1  CCCCACAGACAGTGGGAGTGAGAGTGGGAGTGAGAGCACTTGTTTGCTCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACAGACAGTGGGAGTGAGAGTGGGAGTGAGAGCACTTGTTTGCTCT  494

seq1  GTCTGCCTCACTATTCTTTGTTAACAACATGCATGTATTGGCTCTGCTGG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCCTCACTATTCTTTGTTAACAACATGCATGTATTGGCTCTGCTGG  544

seq1  TGGTAATGAGAGAGACTCGCTAAAGAAATTCTGGTGAGGTTCCTGTAGTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAATGAGAGAGACTCGCTAAAGAAATTCTGGTGAGGTTCCTGTAGTT  594

seq1  TCTTGCTGCTTCAGCAGCCTCAGCTGGTTGTTGAGCCTTGTGGTTCCTTC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCTGCTTCAGCAGCCTCAGCTGGTTGTTGAGCCTTGTGGTTCCTTC  644

seq1  A  648
      |
seq2  A  645

seq1: chrY_573321_573358
seq2: B6Ng01-030E21.g_296_333

seq1  ATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGG  38
      ||| ||||||||||||||||||||||||||||||||||
seq2  ATGAAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGG  38