BAC Information

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BAC

Clone NameB6Ng01-030F12
ChromosomeX (Build37)Y (Build37)
Map Location 159,770,590 - 159,771,780573,321 - 573,545
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneReps2, LOC654358, LOC100041557, LOC667630, Rbbp7, 4932441K18Rik, LOC671250, Syap1, LOC100041607, Ctps2, S100g, LOC100040610
Downstream geneEG637051, Grpr, 1700045I19Rik, Ap1s2, Zrsr2, Car5b, Siah1b, Tmem27, Ace2, Bmx, Pir
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-030F12.bB6Ng01-030F12.g
ACCDH860282DH860283
length1,158467
definitionDH860282|Mus musculus domesticus DNA, BAC clone: B6Ng01-030F12, 5' end.DH860283|Mus musculus domesticus DNA, BAC clone: B6Ng01-030F12, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(159,770,590 - 159,771,780)(573,321 - 573,545)
sequence
gaattctactcaagtatacatgaaatcaaccaccttcttagatcatttcc
taataactctgctgtgcatttatagaaagtctgatttattttcctagcac
agcctctatggtcttatgtttatgtctgtctatgtaatcattcttcctat
aaacaaatatcaaccgcatttccttcatattgctcatctgtttctctttc
aagacttctcattgcccattctctcttcctagaatgtgttttccaaactc
cttagtgctaacattaccaccaattttctgactttcgccttattacagag
gctgctgccaaacattatgattattcttgatacactactgtattttccat
gaaactatcaaaagtcaagagttgttatttgcttcctaaatcctttgtag
aatgtgagtttctgaaaggcctacattgaaattgcctaaagttagaacca
cctcatgagccaatttatcccatagaggtattcaaaaataattcaatcat
agtgaacttgtttggtatattcctatcatcatttctggcacaaactttgt
cattcagtgaagattattttcaataaacaaatgataaagtggttgggaaa
atacaaactgaaaagaaaagccagctttagttatcatatgtcctattcaa
gaaaaatctagtctcctatcattgaactaagtgtccctctccttcctttg
actcttctcccatccttccgacattaggataactgaacaattggaggaaa
gaagaaaggagagaaactgaagctattgtcctcctttaaggaaaagccca
gtttacaagaccacagaaccagatgccctttgcccactcctctgcatctt
aaaaggcctctctgagatctctgtcaaaagaaatattagaactttcttta
tatgaaatctgaggccctctatattagtacatctttttgagaaattacaa
atcacacatcctttgatctcttctcctttataaaacatttccaagtattc
agcaaagccattgagtttacaaagaacgtgttggtgaaattttttttttt
tactttatgaaatcctagatgaaagctatccagctcattcctatattgcg
atcacgggcgtctaagaatatttatcaagcttcattcagatcttagatcc
tgcattgc
cacataaaaccagagacagtgaaacttatagaggagaaagtggggaaaag
ccttgaagacatgggcacaggggaaaaattcccataatcagcctccaaac
gctgacaccatttcatacactggcaagattttgttgaaaggaccctgata
tagccgtctcttgggaggctatgcccgggcctagcaaacacagaagtgga
tgctcacagtcagctattggatagaacacagggcccccaacggaggagct
agagaaagtacccatggagctaaaggggtctgcaaccctataggtggaac
aacaatatgaactaaccagtacccactggagcttgtgtctctagctgcat
atgtatcagaagatggcctagtcggccatcagtggaaagagaggcccatt
ggtcttgcaaactttatatgcctcagtacaggggaacaccagggccaaga
agtaggagtggggtggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_159770590_159771780
seq2: B6Ng01-030F12.b_42_1199 (reverse)

seq1  GCAATGCAGTATCTTTAAGATCTTGAATAGAAGACCTTGTGATAAATAAT  50
      ||||||||| |||  ||||||| ||||| ||||  ||  ||||||||| |
seq2  GCAATGCAGGATC--TAAGATC-TGAAT-GAAG--CT--TGATAAATATT  42

seq1  CTTTTAGGAGCCCCGTGATTCGCATTTAATTAGAGATGAGCTGGATAAGC  100
      |||    ||  ||||||| |||||   |  |||  ||||||||||| |||
seq2  CTT---AGACGCCCGTGA-TCGCA---ATATAGGAATGAGCTGGAT-AGC  84

seq1  TTTCCATCCTTAGGATTTTTAATAAAAGTAAAAAAATAATAATTTCA-CA  149
      ||| ||||  |||||  ||| || |||||||||||| || ||||||| ||
seq2  TTT-CATC--TAGGA--TTTCAT-AAAGTAAAAAAA-AAAAATTTCACCA  127

seq1  ACACGTTTTCTTTGTAAAACTCAATGGCTTTGCTGAATTACTTGGAAATG  199
      |||||  |||||||| ||||||||||||||||||||| ||||||||||||
seq2  ACACG--TTCTTTGT-AAACTCAATGGCTTTGCTGAA-TACTTGGAAATG  173

seq1  TTTTTATAAAGGAAGAAGAGATTCAAAGGATGTGGTGATTTTGTAATTTT  249
       ||||||||||| |||||||| ||||||||||| |||| ||||||| |||
seq2  -TTTTATAAAGG-AGAAGAGA-TCAAAGGATGT-GTGA-TTTGTAA-TTT  217

seq1  CTCAAAAAGATGTACTAATTATAGAGGGCCTTCAGATTTCATATAAAGAA  299
      |||||||||||||||||| ||||||||||| |||||||||||||||||||
seq2  CTCAAAAAGATGTACTAA-TATAGAGGGCC-TCAGATTTCATATAAAGAA  265

seq1  AGTTCT-ATATTTCTTTTGACAGAGATCTCAGAGAGGCCTTTTAAGATGC  348
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTAATATTTCTTTTGACAGAGATCTCAGAGAGGCCTTTTAAGATGC  315

seq1  AGAGGAGTGGGCAAAGGGCATCTGGTTCTGTGGTCTTGTAAACTGGGCTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAGTGGGCAAAGGGCATCTGGTTCTGTGGTCTTGTAAACTGGGCTT  365

seq1  TTCCTTAAAGGAGGACAATAGCTTCAGTTTCTCTCCTTTCTTCTTTCCTC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTAAAGGAGGACAATAGCTTCAGTTTCTCTCCTTTCTTCTTTCCTC  415

seq1  CAATTGTTCAGTTATCCTAATGTCGGAAGGATGGGAGAAGAGTCAAAGGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTGTTCAGTTATCCTAATGTCGGAAGGATGGGAGAAGAGTCAAAGGA  465

seq1  AGGAGAGGGACACTTAGTTCAATGATAGGAGACTAGATTTTTCTTGAATA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAGGGACACTTAGTTCAATGATAGGAGACTAGATTTTTCTTGAATA  515

seq1  GGACATATGATAACTAAAGCTGGCTTTTCTTTTCAGTTTGTATTTTCCCA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATATGATAACTAAAGCTGGCTTTTCTTTTCAGTTTGTATTTTCCCA  565

seq1  ACCACTTTATCATTTGTTTATTGAAAATAATCTTCACTGAATGACAAAGT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTTTATCATTTGTTTATTGAAAATAATCTTCACTGAATGACAAAGT  615

seq1  TTGTGCCAGAAATGATGATAGGAATATACCAAACAAGTTCACTATGATTG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCCAGAAATGATGATAGGAATATACCAAACAAGTTCACTATGATTG  665

seq1  AATTATTTTTGAATACCTCTATGGGATAAATTGGCTCATGAGGTGGTTCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTTTTGAATACCTCTATGGGATAAATTGGCTCATGAGGTGGTTCT  715

seq1  AACTTTAGGCAATTTCAATGTAGGCCTTTCAGAAACTCACATTCTACAAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTAGGCAATTTCAATGTAGGCCTTTCAGAAACTCACATTCTACAAA  765

seq1  GGATTTAGGAAGCAAATAACAACTCTTGACTTTTGATAGTTTCATGGAAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTAGGAAGCAAATAACAACTCTTGACTTTTGATAGTTTCATGGAAA  815

seq1  ATACAGTAGTGTATCAAGAATAATCATAATGTTTGGCAGCAGCCTCTGTA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGTAGTGTATCAAGAATAATCATAATGTTTGGCAGCAGCCTCTGTA  865

seq1  ATAAGGCGAAAGTCAGAAAATTGGTGGTAATGTTAGCACTAAGGAGTTTG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGCGAAAGTCAGAAAATTGGTGGTAATGTTAGCACTAAGGAGTTTG  915

seq1  GAAAACACATTCTAGGAAGAGAGAATGGGCAATGAGAAGTCTTGAAAGAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACACATTCTAGGAAGAGAGAATGGGCAATGAGAAGTCTTGAAAGAG  965

seq1  AAACAGATGAGCAATATGAAGGAAATGCGGTTGATATTTGTTTATAGGAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGATGAGCAATATGAAGGAAATGCGGTTGATATTTGTTTATAGGAA  1015

seq1  GAATGATTACATAGACAGACATAAACATAAGACCATAGAGGCTGTGCTAG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGATTACATAGACAGACATAAACATAAGACCATAGAGGCTGTGCTAG  1065

seq1  GAAAATAAATCAGACTTTCTATAAATGCACAGCAGAGTTATTAGGAAATG  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATAAATCAGACTTTCTATAAATGCACAGCAGAGTTATTAGGAAATG  1115

seq1  ATCTAAGAAGGTGGTTGATTTCATGTATACTTGAGTAGAATTC  1191
      |||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAGAAGGTGGTTGATTTCATGTATACTTGAGTAGAATTC  1158

seq1: chrY_573321_573545
seq2: B6Ng01-030F12.g_313_540

seq1  ATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAAACCT  50
      | ||||||||||||||||||||||| |||||||||||| ||||||| |||
seq2  ACGGAGGAGCTAGAGAAAGTACCCATGGAGCTAAAGGGGTCTGCAACCCT  50

seq1  ATAGATGGAACAACAATATGAA-TAACCAGTATCCAC-AGAGCTCATGTC  98
      |||| ||||||||||||||||| ||||||||| ||||  |||||  ||||
seq2  ATAGGTGGAACAACAATATGAACTAACCAGTACCCACTGGAGCTTGTGTC  100

seq1  TCTAGCTGCATATGTATCAGAAGATGGCCTAGTTGGCCATCATTGGGAAG  148
      ||||||||||||||||||||||||||||||||| |||||||| ||| |||
seq2  TCTAGCTGCATATGTATCAGAAGATGGCCTAGTCGGCCATCAGTGGAAAG  150

seq1  AGAGGCCCCTTGGTCTTGCAAACTTTATATGCCCCAGTACAGGGGAACAC  198
      |||||||| |||||||||||||||||||||||| ||||||||||||||||
seq2  AGAGGCCCATTGGTCTTGCAAACTTTATATGCCTCAGTACAGGGGAACAC  200

seq1  CAGGGCCAAGAAGTGGGAG-AAGGTGGG  225
      |||||||||||||| ||||   ||||||
seq2  CAGGGCCAAGAAGTAGGAGTGGGGTGGG  228