BAC Information

Click to search

BAC

Clone NameB6Ng01-030M06
ChromosomeY (Build37)1 (Build37)
Map Location 1,120,577 - 1,120,880170,310,038 - 170,310,644
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneZfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278
Downstream geneEG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-030M06.bB6Ng01-030M06.g
ACCDH860570DH860571
length500607
definitionDH860570|Mus musculus domesticus DNA, BAC clone: B6Ng01-030M06, 5' end.DH860571|Mus musculus domesticus DNA, BAC clone: B6Ng01-030M06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,120,577 - 1,120,880)(170,310,038 - 170,310,644)
sequence
gaattctggggatttttcagagggtatataaatgctaggtccccgaaagg
tagggtttgtggttggtggttattttgagaggtgcagtctggtgagtaag
gattgttgattacagtttgttagtagttatgctcaaagactagacaaatg
gaataaaatttgattcagggatctctatctctttctctccccctctattc
tttttttcccctttttctttttttttaattaggtattttcctcatttaca
tttccaatgctatcccaaaagtcccccatacacccccccactcccctacc
tacccactcccactttttggccctggtgttcccctgtactggggcatata
aagtttgcaagtccaatgggcctctctttccagtgatggctgactaggcc
atcttttgattcatatgcagctagagacaagagctccggggtactggtta
gttcataatgttgttccacctatagggttgcagatccctttagctccttg

gaattccttacctgaacaaaggaaatattgatcctgaaaaaaaatagtca
tggctttaatgttcttatatttacttgcatgaagaaaactgaatgagggg
caaagatagcacacacactgttttaaaaattcctcgtggttgtgtgtgta
tataatactgcattcaacaagaccaaggtaagaggatcaaactccacgca
tttgtattatagtcagaaaggggccaccggttggaaagaaccgtgtccac
acatgtcctttgacctcctgagaagtgaaaacggttgagacatctcggga
gatgctcacagtccacctgacatgtcatgcaaaggaagcctgagcctcca
gttggctctgccccctggaaacctgcttgtcattaccatgtgtgctgtga
gaagcccagccgaatgctgtaaaatgtgtggagcccatgttttatgagct
gcctccacagttcagagggtgaaaacaggcagagggaagcgggatcgcag
acccatcatcggccagttggcagacatcaagatgcaggcaggaagtcagc
caatgctacaagtcacatgtcaacagaagtgagggaatggggtgggggcg
ggggtga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1120577_1120880
seq2: B6Ng01-030M06.b_245_544

seq1  TTTTTTTAATTTTTTTTTCCATTTTTTATTAGGTATTTAACTCATTTACA  50
      |||||||    ||||| |   ||||| |||||||||||  ||||||||||
seq2  TTTTTTTCCCCTTTTTCTTTTTTTTTAATTAGGTATTTTCCTCATTTACA  50

seq1  TTTCCAATGCTATACCAAAAGTCCCCCATATCCACCCACCCCCACTCCCC  100
      ||||||||||||| ||||||||||||||||  ||||  ||||||||||||
seq2  TTTCCAATGCTATCCCAAAAGTCCCCCATA--CACC--CCCCCACTCCCC  96

seq1  TGCCCACCCACTCCCCCTTTTTGGCCCTGGTATTCCCCTGTACTGGGGCA  150
      | || |||||||||| ||||||||||||||| ||||||||||||||||||
seq2  TACCTACCCACTCCCACTTTTTGGCCCTGGTGTTCCCCTGTACTGGGGCA  146

seq1  TATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTA  200
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCCAGTGATGGCTGACTA  196

seq1  GGCCATCTTTTGATATATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTG  250
      ||||||||||||||  |||||||||||||| |||||||||||||||||||
seq2  GGCCATCTTTTGATTCATATGCAGCTAGAGACAAGAGCTCCGGGGTACTG  246

seq1  GTTAGCTCATAACGTTGTTCCACCTATAGGGTTGGAGATCCCTTTAGCTC  300
      ||||| |||||| ||||||||||||||||||||| |||||||||||||||
seq2  GTTAGTTCATAATGTTGTTCCACCTATAGGGTTGCAGATCCCTTTAGCTC  296

seq1  CTTG  304
      ||||
seq2  CTTG  300

seq1: chr1_170310038_170310644
seq2: B6Ng01-030M06.g_71_677

seq1  GAATTCCTTACCTGAACAAAGGAAATATTGATCCTGAAAAAAAATAGTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTACCTGAACAAAGGAAATATTGATCCTGAAAAAAAATAGTCA  50

seq1  TGGCTTTAATGTTCTTATATTTACTTGCATGAAGAAAACTGAATGAGGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTTAATGTTCTTATATTTACTTGCATGAAGAAAACTGAATGAGGGG  100

seq1  CAAAGATAGCACACACACTGTTTTAAAAATTCCTCGTGGTTGTGTGTGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGATAGCACACACACTGTTTTAAAAATTCCTCGTGGTTGTGTGTGTA  150

seq1  TATAATACTGCATTCAACAAGACCAAGGTAAGAGGATCAAACTCCACGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATACTGCATTCAACAAGACCAAGGTAAGAGGATCAAACTCCACGCA  200

seq1  TTTGTATTATAGTCAGAAAGGGGCCACCGGTTGGAAAGAACCGTGTCCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTATTATAGTCAGAAAGGGGCCACCGGTTGGAAAGAACCGTGTCCAC  250

seq1  ACATGTCCTTTGACCTCCTGAGAAGTGAAAACGGTTGAGACATCTCGGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTCCTTTGACCTCCTGAGAAGTGAAAACGGTTGAGACATCTCGGGA  300

seq1  GATGCTCACAGTCCACCTGACATGTCATGCAAAGGAAGCCTGAGCCTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTCACAGTCCACCTGACATGTCATGCAAAGGAAGCCTGAGCCTCCA  350

seq1  GTTGGCTCTGCCCCCTGGAAACCTGCTTGTCATTACCATGTGTGCTGTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGCTCTGCCCCCTGGAAACCTGCTTGTCATTACCATGTGTGCTGTGA  400

seq1  GAAGCCCAGCCGAATGCTGTAAAATGTGTGGAGCCCATGTTTTATGAGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCCAGCCGAATGCTGTAAAATGTGTGGAGCCCATGTTTTATGAGCT  450

seq1  GCCTCCACAGTTCAGAGGGTGAAAACAGGCAGAGGGAAGCGGGATCGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCACAGTTCAGAGGGTGAAAACAGGCAGAGGGAAGCGGGATCGCAG  500

seq1  ACCCATCATCGGCCAGTTGGCAGACATCAAGATGCAGGCAGGAAGTCAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATCATCGGCCAGTTGGCAGACATCAAGATGCAGGCAGGAAGTCAGC  550

seq1  CAATGCTACAAGTCACATGTCAACAGAAGTGAGGGAATGGGGTGGGGGCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCTACAAGTCACATGTCAACAGAAGTGAGGGAATGGGGTGGGGGCG  600

seq1  GGGGTGA  607
      |||||||
seq2  GGGGTGA  607