BAC Information

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BAC

Clone NameB6Ng01-031M11
Chromosome8 (Build37)Y (Build37)
Map Location 17,981,447 - 17,982,316385,598 - 385,755
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneCsmd1
Downstream geneLOC665638, LOC100040466, Mcph1, Angpt2, Agpat5, LOC100040486, Xkr5, Defb40
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-031M11.bB6Ng01-031M11.g
ACCDH861299DH861300
length899494
definitionDH861299|Mus musculus domesticus DNA, BAC clone: B6Ng01-031M11, 5' end.DH861300|Mus musculus domesticus DNA, BAC clone: B6Ng01-031M11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(17,981,447 - 17,982,316)(385,598 - 385,755)
sequence
gaattctacccattttacaattctcttttcttgattccatttatctggca
actctatgcttttgttaactttcaagagttctaatgaagttgacatttac
agttcctgtggttttttcccagcccccgccccccccaacctgaaattaca
tctatatttttccaataggaaaaaagcgaggtactaccagctctgccagg
ttgctgacagcactccctgggcacattaaaaaatacaataacttgagact
taatcaaacatccctagggttatttgcttgctctccacttctatattgac
atccttcatccatcgacatattaatttatatctactacctaaaattacat
ataatacatgtatgtctgtctaccattagtctgtttatagataaataata
aaggaaattatgtcaactggactgttaatgcttccatcaagagctatgga
ctatctaacaaaagctcaagtacatggcaggatacacatccatttgagtt
gttgatttgggtaatcctagtgatgatcaagccagtataggctattgttg
ttgcccttggtcatccctcagaattttgaagttaagtacttattgatgaa
gacaacataacttttggatcaagacacacaaagttcatctgcatctgacc
tgaaagcctcatctctgtgttcttacttccatggtaccagaatgttttgt
gcaagagaccaagagagataagcatccagtagcctacccatgatacatat
gaaccatgacaattgccaaatggcaagatatcactatgtgtaaatagcat
ggatatctgggcattaatcaacactggctaattggacttaagaacactca
agaggagtaaaaccatggctgggtgctggaaatagtcaactacccaggg
cttttctggtccagtctatttggagttctgtaggcctcttgtatgttcat
gggcatgtctttctttaggtttgggaagttttcttctataattttgttga
agatttttgctggcccattaagtttaagatcttcattctcatccattcct
attatctgtaggtttgttcttctcactgtgtcctggatttcctggatgtt
ttaagttaggatctttttgtgctttttattttctttgattgttgtgctga
tgttctctatggatcttctgcacctgagattctctcttccatctcttgta
ttctgttcctgatctttttttttttttttttttttttttttttttttttt
tttgggttttccaaacagggtttctctgtgctgtcccgggactccctccg
taaaccagggtgggctcaatctcaaaaatttgcctgcctctgcctcccaa
gtgctgggatttaagtcatgcgccaccaagcccgggtaaaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_17981447_17982316
seq2: B6Ng01-031M11.b_41_906

seq1  GAATTCTACCCATTTTACAATTCTCTTTTCTTGATTCCATTTATCTGGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACCCATTTTACAATTCTCTTTTCTTGATTCCATTTATCTGGCA  50

seq1  ACTCTATGCTTTTGTTAACTTTCAAGAGTTCTAATGAAGTTGACATTTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTATGCTTTTGTTAACTTTCAAGAGTTCTAATGAAGTTGACATTTAC  100

seq1  AGTTCCTGTGGTTTTTTCCCAGCCCCCGCCCCCCCCAACCTGAAATTACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCTGTGGTTTTTTCCCAGCCCCCGCCCCCCCCAACCTGAAATTACA  150

seq1  TCTATATTTTTCCAATAGGAAAAAAGCGAGGTACTACCAGCTCTGCCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATATTTTTCCAATAGGAAAAAAGCGAGGTACTACCAGCTCTGCCAGG  200

seq1  TTGCTGACAGCACTCCCTGGGCACATTAAAAAATACAATAACTTGAGACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGACAGCACTCCCTGGGCACATTAAAAAATACAATAACTTGAGACT  250

seq1  TAATCAAACATCCCTAGGGTTATTTGCTTGCTCTCCACTTCTATATTGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCAAACATCCCTAGGGTTATTTGCTTGCTCTCCACTTCTATATTGAC  300

seq1  ATCCTTCATCCATCGACATATTAATTTATATCTACTACCTAAAATTACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTCATCCATCGACATATTAATTTATATCTACTACCTAAAATTACAT  350

seq1  ATAATACATGTATGTCTGTCTACCATTAGTCTGTTTATAGATAAATAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATACATGTATGTCTGTCTACCATTAGTCTGTTTATAGATAAATAATA  400

seq1  AAGGAAATTATGTCAACTGGACTGTTAATGCTTCCATCAAGAGCTATGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAATTATGTCAACTGGACTGTTAATGCTTCCATCAAGAGCTATGGA  450

seq1  CTATCTAACAAAAGCTCAAGTACATGGCAGGATACACATCCATTTGAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTAACAAAAGCTCAAGTACATGGCAGGATACACATCCATTTGAGTT  500

seq1  GTTGATTTGGGTAATCCTAGTGATGATCAAGCCAGTATAGGCTATTGTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATTTGGGTAATCCTAGTGATGATCAAGCCAGTATAGGCTATTGTTG  550

seq1  TTGCCCTTGGTCATCCCTCAGAATTTTGAAGTTAAGTACTTATTGATGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCTTGGTCATCCCTCAGAATTTTGAAGTTAAGTACTTATTGATGAA  600

seq1  GACAACATAACTTTTGGATCAAGACACACAAAGTTCATCTGCATCTGACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAACATAACTTTTGGATCAAGACACACAAAGTTCATCTGCATCTGACC  650

seq1  TGAAAGCCTCATCTCTGTGTTCTTACTTCCATGGTACCAGAAGGTTTTGT  700
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TGAAAGCCTCATCTCTGTGTTCTTACTTCCATGGTACCAGAATGTTTTGT  700

seq1  GCAAGAGACCAAGAGAGATAAGCATCCAGTAGCCTACCCATGATACATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAGACCAAGAGAGATAAGCATCCAGTAGCCTACCCATGATACATAT  750

seq1  GAACCATGACAATTGCCAAAATGGCAAGATATCACTATGTGTAAAATAGC  800
      ||||||||||||||||| |||||||||||||||||||||||| |||||||
seq2  GAACCATGACAATTGCC-AAATGGCAAGATATCACTATGTGT-AAATAGC  798

seq1  ATGGATATCTGGGCATTAATCAACAACTGGCTAATTGGACTTAAAGAACA  850
      |||||||||||||||||||||||| ||||||||||||||||| |||||||
seq2  ATGGATATCTGGGCATTAATCAAC-ACTGGCTAATTGGACTT-AAGAACA  846

seq1  CTCAAGAGGAGTAAAACCAT  870
      ||||||||||||||||||||
seq2  CTCAAGAGGAGTAAAACCAT  866

seq1: chrY_385598_385755
seq2: B6Ng01-031M11.g_388_553

seq1  -------------------TCTTTTTTTTTTTTTTTTTTTTGGTTTTTTG  31
                         | |||||||||||||||||||||| ||||  
seq2  TCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGTTTTCC  50

seq1  AGACAGGTTTTCTCTATATATAGCCCTGGCTGTCCTGGAACTCACTCTGT  81
      | ||||| ||||||| |           ||||||| || |||| ||| ||
seq2  AAACAGGGTTTCTCTGT-----------GCTGTCCCGGGACTCCCTCCGT  89

seq1  AGACCAGGCTGGCCTCGAACTCAGAAATCTGCCTGCCTCTGCCTCCCGAG  131
      | |||||| ||| ||| | |||| |||| |||||||||||||||||| ||
seq2  AAACCAGGGTGGGCTCAATCTCAAAAATTTGCCTGCCTCTGCCTCCCAAG  139

seq1  TGCTGGGATTAAAGGCTTGCGCCACCA  158
      |||||||||| ||| | ||||||||||
seq2  TGCTGGGATTTAAGTCATGCGCCACCA  166