BAC Information

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BAC

Clone NameB6Ng01-033M07
Chromosome14 (Build37)Y (Build37)
Map Location 42,779,407 - 42,780,4201,870,346 - 1,870,436
singlet/doubletsingletsinglet
Overlap geneLOC666233
Upstream geneTspan14, 5730469M10Rik, Dydc2, EG622782, Dydc1, Mat1a, Sftpa1, LOC100040498, LOC666079, Mbl1, Sftpd, LOC666093, EG666099, LOC100040545, LOC676294, LOC545034, LOC100040587, EG666138, EG624191, EG666149, LOC666155, EG666156, LOC100040642, LOC100041729, LOC624277, LOC100041810, EG666186, LOC100041722, LOC100041841, EG666207, LOC666214, LOC632737, EG623168, LOC100041849, 1700016D02Rik, LOC100040726, LOC666228, LOC100041930, EG666152, EG385234, LOC100041950, LOC100041910
Downstream geneLOC674032, EG666239, LOC100040759, LOC100040771, EG666253, EG666264, LOC100040787, EG666280, EG666285, LOC666298, LOC100042031, EG666318, EG546249, LOC100040863, LOC100040875, LOC100040890, LOC100042055, LOC635209, 1700091H14Rik, EG666415, LOC100040976, LOC100040983, LOC100042114, LOC666370, EG666376, LOC100041025, EG666396, LOC100041046, LOC100042130, LOC624893, LOC100041069, EG666420, LOC666436
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-033M07.bB6Ng01-033M07.g
ACCDH862727DH862728
length1,006500
definitionDH862727|Mus musculus domesticus DNA, BAC clone: B6Ng01-033M07, 5' end.DH862728|Mus musculus domesticus DNA, BAC clone: B6Ng01-033M07, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(42,779,407 - 42,780,420)(1,870,346 - 1,870,436)
sequence
gaattctctctgttcattatctcctatcacaccgcatcctttatactgac
catttctcagaatattcccagtaaacctttgatattattttaatttaagt
ttagattcagcatgattagagaaaatgtgcagcatttgtccttttgattt
tggttcatttcatctctttgactgtcttccattccctccattcttcagca
gatgacataagtgcattctgaataacacttcccatttcccaatgttttgg
tctagtaatgtgtttccaggcagattctataatgtggcatttttgtacag
tgctgcagtgcacatccttgtatgcaagcacctctactgacatcaatctt
ccagctaaatgtttaaatgtaggattgcagcatagaatggcagttctatt
tcaggactttgagcatcctctaaaccaaggttttctccgcggctttgcta
gtttcctgtcttagtgaatagtgttcctttcctcacatcctccacaccat
ttgttctttgttcccttaattatgcacatgctgtctggaatgagattgca
cgttggtgtggttttctttaaattttcattccttttatgcctgaaaatat
tgaatatggttcattatttattcaccatttcactcctttttggaatcatc
tgttcatctcatttactgtgaacccctgtattactagaattctacccaga
aacctgtgtccttacctacatcttgctgtggcttctcttaggaatttcta
cctattataataagatctttaattaatagtgatatgactttagtccagtg
tcacatcttggaatctgatttctgttcacacatatgaggacccacatggc
caggcaccatttggtaagggtatcttttcttcaatgtaagtttgacttcc
ttactagaattcacatgccttttctctgtagacaactcattctgggtgaa
aggtcatggtgctgttgagtcacataccggtgaagaggattcgggctaat
catgcc
gaattcacacaatatgtactcactgataagtggatattagccccaaacct
aggattcccaagatataaggtacaatttgctaaacacatgaatctcaaga
agaatgaagactgaagtgtggacactatgcccctccttagaattgggaac
aaaacacccatggaaggagttacagagacaaggtttggagctgagatgaa
aggatggaccatgtagagactgccatatccagggatccaccccataatca
gcatccaaacgctgacaccattgcataccctagcaagattttattgaaag
gacccagatgtagctatctcttctgagactatgccgggggcctagcaaac
acagaagtggatgctcacagtcagctaatggatggatcacagggctccca
atggaggagctagagaaagaaccgaaggagctaaagggatctgcaaccct
ataggtggaacaacattatgaagtaaccagtaccacggagctcttgactc

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_42779407_42780420
seq2: B6Ng01-033M07.b_45_1050 (reverse)

seq1  GGCATGATTAGGCCAGAACTCCTCTTCACC-GTATGTGACTTCAACCAAG  49
      |||||||||| ||| ||| ||||||||||| ||||||||| |||||  ||
seq2  GGCATGATTA-GCCCGAA-TCCTCTTCACCGGTATGTGAC-TCAAC--AG  45

seq1  CACCCATGACCTTTTCACCCAGAATGAGTTGTTCTGACAGAGAAAAGGCA  99
      || |||||||| ||||||||||||||||||| ||| ||||||||||||||
seq2  CA-CCATGACC-TTTCACCCAGAATGAGTTG-TCT-ACAGAGAAAAGGCA  91

seq1  TGTGAATTCTAGTAAGGAAGTCAAACTTACATTGAAGAAAAGATACCCTT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAATTCTAGTAAGGAAGTCAAACTTACATTGAAGAAAAGATACCCTT  141

seq1  ACCAAATGGTGCCTGGCCATGTGGGTCCTCATATGTGTGAACAGAAATCA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAATGGTGCCTGGCCATGTGGGTCCTCATATGTGTGAACAGAAATCA  191

seq1  GATTCCAAGATGTGACACTGGACTAAAGTCATATCACTATTAATTAAAGA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCAAGATGTGACACTGGACTAAAGTCATATCACTATTAATTAAAGA  241

seq1  TCTTATTATAATAGGTAGAAATTCCTAAGAGAAGCCACAGCAAGATGTAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATTATAATAGGTAGAAATTCCTAAGAGAAGCCACAGCAAGATGTAG  291

seq1  GTAAGGACACAGGTTTCTGGGTAGAATTCTAGTAATACAGGGGTTCACAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGGACACAGGTTTCTGGGTAGAATTCTAGTAATACAGGGGTTCACAG  341

seq1  TAAATGAGATGAACAGATGATTCCAAAAAGGAGTGAAATGGTGAATAAAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGAGATGAACAGATGATTCCAAAAAGGAGTGAAATGGTGAATAAAT  391

seq1  AATGAACCATATTCAATATTTTCAGGCATAAAAGGAATGAAAATTTAAAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAACCATATTCAATATTTTCAGGCATAAAAGGAATGAAAATTTAAAG  441

seq1  AAAACCACACCAACGTGCAATCTCATTCCAGACAGCATGTGCATAATTAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCACACCAACGTGCAATCTCATTCCAGACAGCATGTGCATAATTAA  491

seq1  GGGAACAAAGAACAAATGGTGTGGAGGATGTGAGGAAAGGAACACTATTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACAAAGAACAAATGGTGTGGAGGATGTGAGGAAAGGAACACTATTC  541

seq1  ACTAAGACAGGAAACTAGCAAAGCCGCGGAGAAAACCTTGGTTTAGAGGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGACAGGAAACTAGCAAAGCCGCGGAGAAAACCTTGGTTTAGAGGA  591

seq1  TGCTCAAAGTCCTGAAATAGAACTGCCATTCTATGCTGCAATCCTACATT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAAAGTCCTGAAATAGAACTGCCATTCTATGCTGCAATCCTACATT  641

seq1  TAAACATTTAGCTGGAAGATTGATGTCAGTAGAGGTGCTTGCATACAAGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACATTTAGCTGGAAGATTGATGTCAGTAGAGGTGCTTGCATACAAGG  691

seq1  ATGTGCACTGCAGCACTGTACAAAAATGCCACATTATAGAATCTGCCTGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCACTGCAGCACTGTACAAAAATGCCACATTATAGAATCTGCCTGG  741

seq1  AAACACATTACTAGACCAAAACATTGGGAAATGGGAAGTGTTATTCAGAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACATTACTAGACCAAAACATTGGGAAATGGGAAGTGTTATTCAGAA  791

seq1  TGCACTTATGTCATCTGCTGAAGAATGGAGGGAATGGAAGACAGTCAAAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTTATGTCATCTGCTGAAGAATGGAGGGAATGGAAGACAGTCAAAG  841

seq1  AGATGAAATGAACCAAAATCAAAAGGACAAATGCTGCACATTTTCTCTAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAAATGAACCAAAATCAAAAGGACAAATGCTGCACATTTTCTCTAA  891

seq1  TCATGCTGAATCTAAACTTAAATTAAAATAATATCAAAGGTTTACTGGGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCTGAATCTAAACTTAAATTAAAATAATATCAAAGGTTTACTGGGA  941

seq1  ATATTCTGAGAAATGGTCAGTATAAAGGATGCGGTGTGATAGGAGATAAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCTGAGAAATGGTCAGTATAAAGGATGCGGTGTGATAGGAGATAAT  991

seq1  GAACAGAGAGAATTC  1014
      |||||||||||||||
seq2  GAACAGAGAGAATTC  1006

seq1: chrY_1870346_1870436
seq2: B6Ng01-033M07.g_478_568

seq1  CTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGA  50
      |||||||||| ||| |||||||||||||||||||||||||||||||||||
seq2  CTAGAGAAAGAACCGAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGA  50

seq1  ACAACATTATGAACTAACCATTACCCCTGAGCTCTTGACTC  91
      ||||||||||||| |||||| |||| | |||||||||||||
seq2  ACAACATTATGAAGTAACCAGTACCACGGAGCTCTTGACTC  91