BAC Information

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BAC

Clone NameB6Ng01-035E16
ChromosomeY (Build37)12 (Build37)
Map Location 573,321 - 573,5159,361,912 - 9,362,117
singlet/doubletsingletsinglet
Overlap geneUty
Upstream geneLOC100039202, Zfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps
Downstream geneDdx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-035E16.bB6Ng01-035E16.g
ACCDH863797DH863798
length552705
definitionDH863797|Mus musculus domesticus DNA, BAC clone: B6Ng01-035E16, 5' end.DH863798|Mus musculus domesticus DNA, BAC clone: B6Ng01-035E16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(573,321 - 573,515)(9,361,912 - 9,362,117)
sequence
gaattcccctgtactgggacatataaagtatacaagaccaaggggcctct
cttcccaatgatggccaactaggccatcttctgctacatatgcagctaga
gacatgagctctgggggtactggttagttcatattattgttctacctaca
gggtagcagaccccttgtgctccttgggaactttctctagctcctccatt
agtggccctgtgttccatccaatagatgattatgagcatccacttctgta
tttgccaggcactggcatagcctcaccagagacagctatatcagggtcct
ttcagcaaaatcttgctggcatatgcaatagtgtctgcatttggtggctg
attatgggatggatcttcggtggggcagtctctggatggttcatcctttc
gtctcagctccaaactttgactctgtaactcctttccatgggtatttttg
ttccctattctaaggaatggagtatccatgctttggtcttccttcttttt
gattttcttgtgttttgcaaattgtatcttggatattctaagtttctggg
ct
gaattcagggcccccatatctatgtaaaaaagcaaaattcgagcaattcc
aggtgtgagaagactcaggatgatccctgcagtcactagcggggcagtgt
aggcaaaacactgagctcccggttcagtgagagacactgggtcaaaacac
aaggcaaacaaacaaacagacaaacaccaaaaaatagaaagtggcgaggc
aagacatccaactgtgacctcagcatcacacacacacacatacacacaca
cacacacacacacacacacagagagagagagagagagagagagagagaga
gaactgcacacataggtaccagcatccccacaaagccatgtatatactta
cacacagagacactcacaagtacatacacccaagcatacacatgcagatt
ttctatagaaaattgaaaactaatttggtttttaaaattaatttattttt
tacattccgtattttatccccccccccatttaccctctgactgttccaca
tcccatacctcctccccacccccctgtctccatgtgaatgtccccacccc
ccacccacctgacctctaaactccctggggcctccagtctcttgagggtt
agtgcatcatctctgattgaacacagacccagaagtcctctactgtgcgt
gtgttgggggcctctatcagctggtgtatgctgtctgtttgtggccagtg
tttga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_573321_573515
seq2: B6Ng01-035E16.b_48_243 (reverse)

seq1  ATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAAACCT  50
      |||||||||||||||||||| ||||||||||  ||||| ||||| | |||
seq2  ATGGAGGAGCTAGAGAAAGTTCCCAAGGAGCACAAGGGGTCTGCTACCCT  50

seq1  ATAGATGGAACAACAATATGAA-TAACCAGTATCCACAGAGCTCATGTCT  99
       ||| | |||||| |||||||| ||||||||| || ||||||||||||||
seq2  GTAGGTAGAACAATAATATGAACTAACCAGTACCCCCAGAGCTCATGTCT  100

seq1  CTAGCTGCATATGTATCAGAAGATGGCCTAGTTGGCCATCATTGGGAAGA  149
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CTAGCTGCATATGTAGCAGAAGATGGCCTAGTTGGCCATCATTGGGAAGA  150

seq1  GAGGCCCCTTGGTCTTGCAAACTTTATATGCCCCAGTACAGGGGAA  195
      ||||||||||||||||| | |||||||||| |||||||||||||||
seq2  GAGGCCCCTTGGTCTTGTATACTTTATATGTCCCAGTACAGGGGAA  196

seq1: chr12_9361912_9362117
seq2: B6Ng01-035E16.g_563_769 (reverse)

seq1  TCAAACACTGGACCACCTAACAGACAACATGCACCAGCTGATAAGAGGCC  50
      ||||||||||| ||| | |||||||| ||| ||||||||||| |||||||
seq2  TCAAACACTGG-CCA-CAAACAGACAGCATACACCAGCTGAT-AGAGGCC  47

seq1  CCTAACACACATACAGCAGAGGACTTTCTGGGTCTGTGTTCATTCAGAGA  100
      || |||||||  |||| ||||||| ||||||||||||||||| |||||||
seq2  CCCAACACACGCACAGTAGAGGAC-TTCTGGGTCTGTGTTCAATCAGAGA  96

seq1  TGATGCACATAACCCTC--CAGACTGGAGACCCCAGAGCATTTAGAAGTC  148
      |||||||| ||||||||   ||||||||| |||||| |  |||||| |||
seq2  TGATGCAC-TAACCCTCAAGAGACTGGAGGCCCCAGGGAGTTTAGAGGTC  145

seq1  AGGT------GGGGTGGGAGTATCCACAGGGAGACAGGGCAGGGTGGGGA  192
      ||||      ||||||||   || |||| ||||||||||  |||||||||
seq2  AGGTGGGTGGGGGGTGGGGACATTCACATGGAGACAGGG--GGGTGGGGA  193

seq1  GGAGGTATGGGATG  206
      ||||||||||||||
seq2  GGAGGTATGGGATG  207