BAC Information

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BAC

Clone NameB6Ng01-041E13
ChromosomeY (Build37)7 (Build37)
Map Location 573,321 - 573,356102,159,016 - 102,159,923
singlet/doubletsingletsinglet
Overlap geneUty
Upstream geneLOC100039202, Zfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps
Downstream geneDdx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-041E13.bB6Ng01-041E13.g
ACCDH867988DH867989
length500910
definitionDH867988|Mus musculus domesticus DNA, BAC clone: B6Ng01-041E13, 5' end.DH867989|Mus musculus domesticus DNA, BAC clone: B6Ng01-041E13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(573,321 - 573,356)(102,159,016 - 102,159,923)
sequence
gaattcctaggcaaatggatggacctggagttgcatcatcgtgagtgagg
tagcccaatcacaaaagaactcacatgatatgtactcactgataagtgga
tatcagcccagaaacttagaattcccaagatacaagatacaatttgcaaa
acacatgaaactcaagaagaacgaagaccaaaatgtggacactttgcccc
ttcttagaatagggaacaaaacacccatggaaggagttacagagacaaaa
tttggagcttagatgaaaggattgaccatctagagactgccatacccgga
gatgcatcccataatcagccttcaaatgctacaccattgcatacactagc
aagattttgctgaaaggaacctgatatagctgtctcttgtgagactattc
aggggcctagcaaacagagaagtggatgctcacagtcagctattgtatgg
atcacaaggccccaatggatgagctagagaaagtacccaaggagctaaag

gaattctctttgacagacagacagagacagagagagagagagagagagag
agagagagagagagagagagagagagagagagctctaaatcaatgaaata
tgacaaagaacccagttgtctttaagttaccagttttttcatggattatt
gtgtgcaagaaatgagtaatatcaccagaaaaatagtgtacccaagatgt
tattttcatagatacccacaaaatcctttcttcctaaacacaatttagtg
gtgtacttgtggcttgttatcacaggttgttattttaatctaatgccaaa
ctataagcactcctttggaagcaaaccacaaatgaccacagctcatgttg
ttgtctagtatcctgttgagaagcccctaaaatagactgctattctccta
aaatgcaaatttatactggccttatactttgcttctcagaatatttatat
aacttccacttctttctcagaaatcctatttgatatttattattttttcc
tgatcactcatatacctacccagacatttaagtatactcataaaactgtg
tatcattttatgtaataggatattttttcaaatgccataaattctctttg
atggtttagatgttttggacaattttacactaatttttgtcctttaatgg
aaacatcaccatcttttaaaatgaaggctaatattaaaagaacattttcc
agtatgccatattttttaattaagatgaaaattttcactggtaatacaat
atattttaaaataatagcatctatattgagacagattagaaggccacctt
tattctgacttttttcttttttttgttcttgagatccagctatgtaaccg
atctcagtttcttcacttacttatttgacaacggagataatgatatgaac
agaaagcact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_573321_573356
seq2: B6Ng01-041E13.b_497_532

seq1  ATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAG  36
      ||||| ||||||||||||||||||||||||||||||
seq2  ATGGATGAGCTAGAGAAAGTACCCAAGGAGCTAAAG  36

seq1: chr7_102159016_102159923
seq2: B6Ng01-041E13.g_69_978

seq1  GAATTCTCTTTGACAGACAGACAGAGACAGAGAGAGAGAGAGAGAGAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTTGACAGACAGACAGAGACAGAGAGAGAGAGAGAGAGAGAG  50

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCTCTAAATCAATGAAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCTCTAAATCAATGAAATA  100

seq1  TGACAAAGAACCCAGTTGTCTTTAAGTTACCAGTTTTTTCATGGATTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAAGAACCCAGTTGTCTTTAAGTTACCAGTTTTTTCATGGATTATT  150

seq1  GTGTGCAAGAAATGAGTAATATCACCAGAAAAATAGTGTACCCAAGATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCAAGAAATGAGTAATATCACCAGAAAAATAGTGTACCCAAGATGT  200

seq1  TATTTTCATAGATACCCACAAAATCCTTTCTTCCTAAACACAATTTAGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCATAGATACCCACAAAATCCTTTCTTCCTAAACACAATTTAGTG  250

seq1  GTGTACTTGTGGCTTGTTATCACAGGTTGTTATTTTAATCTAATGCCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTACTTGTGGCTTGTTATCACAGGTTGTTATTTTAATCTAATGCCAAA  300

seq1  CTATAAGCACTCCTTTGGAAGCAAACCACAAATGACCACAGCTCATGTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAAGCACTCCTTTGGAAGCAAACCACAAATGACCACAGCTCATGTTG  350

seq1  TTGTCTAGTATCCTGTTGAGAAGCCCCTAAAATAGACTGCTATTCTCCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTAGTATCCTGTTGAGAAGCCCCTAAAATAGACTGCTATTCTCCTA  400

seq1  AAATGCAAATTTATACTGGCCTTATACTTTGCTTCTCAGAATATTTATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCAAATTTATACTGGCCTTATACTTTGCTTCTCAGAATATTTATAT  450

seq1  AACTTCCACTTCTTTCTCAGAAATCCTATTTGATATTTATTATTTTTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCCACTTCTTTCTCAGAAATCCTATTTGATATTTATTATTTTTTCC  500

seq1  TGATCACTCATATACCTACCCAGACATTTAAGTATACTCATAAAACTGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCACTCATATACCTACCCAGACATTTAAGTATACTCATAAAACTGTG  550

seq1  TATCATTTTATGTAATAGGATATTTTTTCAAATGCCATAAATTCTC-TTG  599
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TATCATTTTATGTAATAGGATATTTTTTCAAATGCCATAAATTCTCTTTG  600

seq1  ATGGTTTAGATGTTTTGGACAATTTTACACTAATTTTTGTCCTTTAATGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTTAGATGTTTTGGACAATTTTACACTAATTTTTGTCCTTTAATGG  650

seq1  AAACATCACCATCTTTTAAAATGAAGGCTAATATT-AAAGAACATTTTCC  698
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AAACATCACCATCTTTTAAAATGAAGGCTAATATTAAAAGAACATTTTCC  700

seq1  AGTATGCCATA-TTTTTAATTAAGATG-AAATTTTCACTGGTAATACAAT  746
      ||||||||||| ||||||||||||||| ||||||||||||||||||||||
seq2  AGTATGCCATATTTTTTAATTAAGATGAAAATTTTCACTGGTAATACAAT  750

seq1  ATA-TTTAAAATAATAGCATCTATATTGAGACAGATTAGAAGGCCACCTT  795
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTAAAATAATAGCATCTATATTGAGACAGATTAGAAGGCCACCTT  800

seq1  TAATTCTGAC-TTTTTCTTTTTTTTGTTCTTGAGATCCAGCTATGTAACC  844
      | |||||||| |||||||||||||||||||||||||||||||||||||||
seq2  T-ATTCTGACTTTTTTCTTTTTTTTGTTCTTGAGATCCAGCTATGTAACC  849

seq1  GATCTCAGTTTCTTCAGCTTACTTATTTGACAAACGGAGATAATGATATT  894
      |||||||||||||||| |||||||||||||| |||||||||||||||| |
seq2  GATCTCAGTTTCTTCA-CTTACTTATTTGAC-AACGGAGATAATGATA-T  896

seq1  GAACAGAAAGCACT  908
      ||||||||||||||
seq2  GAACAGAAAGCACT  910