BAC Information

Click to search

BAC

Clone NameB6Ng01-041G03
ChromosomeY (Build37)3 (Build37)
Map Location 1,870,455 - 1,870,56935,042,310 - 35,042,554
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210
Downstream geneUbe1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-041G03.bB6Ng01-041G03.g
ACCDH868063DH868064
length310154
definitionDH868063|Mus musculus domesticus DNA, BAC clone: B6Ng01-041G03, 5' end.DH868064|Mus musculus domesticus DNA, BAC clone: B6Ng01-041G03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,870,455 - 1,870,569)(35,042,310 - 35,042,554)
sequence
taccatgtattcaaagaagtgttaaagccaatactccagatccaggaaag
agaatagaaggagcattgcctaatgtattttatgaggctacagttgtcct
gatacataaaccatataaagactcagtaaagaaggaattattgattattt
tttctcatggacatagatataaaaatactcaataaaatattttaagatgg
cctagtcggccatcaatgggaagagaggcccccttgctattgcaaacttt
atatgccccagtacaggggaatgccaggaccaagaagcgggagtgggtgg
gtaggggagc
tgacactgtggaataaaacacacacacacacacacacacaaacactgtgt
atgtatgtatgtatgtatatatatatgtatgtatgtatatatatgtatgt
atacatacagagtgagtgtgtgtgtgagtgagtgtgatatataatgtgtg
tata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1870455_1870569
seq2: B6Ng01-041G03.b_245_360

seq1  AAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGG-CCCATTGGACATGC  49
      |||||||||||||||||||||| ||| |||||||| ||| |||    |||
seq2  AAGATGGCCTAGTCGGCCATCAATGGGAAGAGAGGCCCCCTTGCTATTGC  50

seq1  AAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCCAAAAAGGGGCAG  99
      |||||||||||||||||||||||||||| |||||| |||| ||| || ||
seq2  AAACTTTATATGCCCCAGTACAGGGGAATGCCAGGACCAAGAAGCGGGAG  100

seq1  TGGGTGGGTAGGGGAG  115
      ||||||||||||||||
seq2  TGGGTGGGTAGGGGAG  116

seq1: chr3_35042310_35042554
seq2: B6Ng01-041G03.g_126_226 (reverse)

seq1  TATACACACATTATATATAAACATAGTATATATATGCATATATACACATA  50
                                                        
seq2  --------------------------------------------------  0

seq1  TATGTATATATACACATTTATATGTATACTTACACACATATATACATATA  100
                                                        
seq2  --------------------------------------------------  0

seq1  CATAAACACATGTATACATACACACATATACATATATATACATTGTATA-  149
                                      |||| | ||||| |||| 
seq2  --------------------------------TATACACACATTATATAT  18

seq1  CACATATATACATATATACATTGTATACATTGTATATGTATGTATATATG  199
      ||||   |  || | | ||| |    ||  ||||| | ||  || |||| 
seq2  CACACTCACTCACACACACACT---CACTCTGTATGTATACATACATATA  65

seq1  TATACATACACATATACATATACATATATATATACATACATACATA  245
      |||||||||          |||||||||||||||||||||||||||
seq2  TATACATAC----------ATACATATATATATACATACATACATA  101