BAC Information

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BAC

Clone NameB6Ng01-042C16
Chromosome4 (Build37)Y (Build37)
Map Location 72,792,621 - 72,793,1381,870,346 - 1,870,572
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneTle1, Aldoa-ps2, EG384113, LOC667713, LOC100039698
Downstream geneOTTMUSG00000001246, LOC100039726, LOC667722, LOC623115, OTTMUSG00000000281, OTTMUSG00000000280, OTTMUSG00000000282, OTTMUSG00000000283, Gm428, Rasef, LOC667768, LOC545637, LOC623272, OTTMUSG00000014862, OTTMUSG00000004010, 2310002L09Rik, Frmd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-042C16.bB6Ng01-042C16.g
ACCDH868619DH868620
length1,001488
definitionDH868619|Mus musculus domesticus DNA, BAC clone: B6Ng01-042C16, 5' end.DH868620|Mus musculus domesticus DNA, BAC clone: B6Ng01-042C16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(72,792,621 - 72,793,138)(1,870,346 - 1,870,572)
sequence
gaattcctgtttaagtggctgtcttcgatagagctactacttttatgatg
aaacaccatgaccaaagcaacttggggagtaaatgttttatttgactaac
attttcacatcactgtttatcatcaaagtaagttaagacaggaactcaag
taagcaggaacttggaagctggagctgatggggaagccatgtaggaatgc
tgcatactggcttttttctcatggtatgttcacccaagcctgattcctta
tataaaccagatcagaggtgtcaccacatgcaattggctgcaccctcgaa
aatcaatcatttttaagaaaataatttaaactgtagcatctacaggcttg
gttatactctaatactatggggtggtgttttctcaattgtgatctcttcc
tcttagataagtatagcgtgtcaagttgacataaaaataaccagaataat
tgtcatggttatcttttaaaaaacgttatttaaccaaggaatccaaatgg
tggctagaaaattattcattcttaacattcaataatgtttttcctagtat
attaaaaaaagttccactatgcttgccctaatatatatgttaattaccta
actctagagtctcagattgttgctgtgtttgaagacagaaccattaaaat
atatccaggttatacttatcttttttttagacaaactcttatttaaactt
attggtaaccctttaagaagggagacaacaacgatatagaagaacagagt
aaattccacatggggacaaaggaaaagatattaatctttactaagggtgg
tctcaagggttaccaaatatgcctgtgctaaatttttgtgtcaggagcca
tgtaagaactgtaagtacagaatttgtgcttttctagaagccttagaaaa
ctgatattctacccaatgaccaaatctaactgaagttaacaggttaaaaa
caaacaaatctaaactgttcttatagacaagctttgtatgtttacaaaat
g
aaggcagatacctaaacatagtaaaagcagtagacagcaaaccagcagcc
agcattaaattaaaaggagagactgccatatcaggggatccatcccataa
tcagcttccaaacgctgacaccattgcatacactagtaagattttgctga
aaggaccctgatagagctgtctcttgtgagactatgctggggcctagcaa
acacagaagtggatgctcacagtcagctattggatatatcacagggcccc
caatggagaagctagagaaagtacccaaggagctaaagggatctgcaatc
ctataggtggaacaacattatgaactaaccagtaccccggagctcttgac
tatagctgcatatgtatcaaaagatggcctagtcagccatcactggaaag
agaggcccattggacttgcaaactttatatgccccagtacaggggaacgc
cagggccaaaaagtgggagttggtgggtaggggagtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_72792621_72793138
seq2: B6Ng01-042C16.b_46_563 (reverse)

seq1  TGAATAATTTTCTAGCCACCATTTGGATTCCTTGGTTAAATAACGTTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAATTTTCTAGCCACCATTTGGATTCCTTGGTTAAATAACGTTTTT  50

seq1  TAAAAGATAACCATGACAATTATTCTGGTTATTTTTATGTCAACTTGACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGATAACCATGACAATTATTCTGGTTATTTTTATGTCAACTTGACA  100

seq1  CGCTATACTTATCTAAGAGGAAGAGATCACAATTGAGAAAACACCACCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTATACTTATCTAAGAGGAAGAGATCACAATTGAGAAAACACCACCCC  150

seq1  ATAGTATTAGAGTATAACCAAGCCTGTAGATGCTACAGTTTAAATTATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTATTAGAGTATAACCAAGCCTGTAGATGCTACAGTTTAAATTATTT  200

seq1  TCTTAAAAATGATTGATTTTCGAGGGTGCAGCCAATTGCATGTGGTGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAAAATGATTGATTTTCGAGGGTGCAGCCAATTGCATGTGGTGACA  250

seq1  CCTCTGATCTGGTTTATATAAGGAATCAGGCTTGGGTGAACATACCATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGATCTGGTTTATATAAGGAATCAGGCTTGGGTGAACATACCATGA  300

seq1  GAAAAAAGCCAGTATGCAGCATTCCTACATGGCTTCCCCATCAGCTCCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAGCCAGTATGCAGCATTCCTACATGGCTTCCCCATCAGCTCCAG  350

seq1  CTTCCAAGTTCCTGCTTACTTGAGTTCCTGTCTTAACTTACTTTGATGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAAGTTCCTGCTTACTTGAGTTCCTGTCTTAACTTACTTTGATGAT  400

seq1  AAACAGTGATGTGAAAATGTTAGTCAAATAAAACATTTACTCCCCAAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGTGATGTGAAAATGTTAGTCAAATAAAACATTTACTCCCCAAGTT  450

seq1  GCTTTGGTCATGGTGTTTCATCATAAAAGTAGTAGCTCTATCGAAGACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGGTCATGGTGTTTCATCATAAAAGTAGTAGCTCTATCGAAGACAG  500

seq1  CCACTTAAACAGGAATTC  518
      ||||||||||||||||||
seq2  CCACTTAAACAGGAATTC  518

seq1: chrY_1870346_1870572
seq2: B6Ng01-042C16.g_335_561

seq1  CTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGA  50
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAATCCTATAGGTGGA  50

seq1  ACAACATTATGAACTAACCATTACCCCTGAGCTCTTGACTCTTGCTGCAT  100
      |||||||||||||||||||| |||||| |||||||||||| | |||||||
seq2  ACAACATTATGAACTAACCAGTACCCCGGAGCTCTTGACTATAGCTGCAT  100

seq1  AGGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATT  150
      | ||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ATGTATCAAAAGATGGCCTAGTCAGCCATCACTGGAAAGAGAGGCCCATT  150

seq1  GGACATGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCCAAAA  200
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCCAAAA  200

seq1  AGGGGCAGTGGGTGGGTAGGGGAGTGG  227
      || || ||| |||||||||||||||||
seq2  AGTGGGAGTTGGTGGGTAGGGGAGTGG  227