BAC Information

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BAC

Clone NameB6Ng01-042H15
ChromosomeY (Build37)
Map Location 2,412,022 - 2,412,347
singlet/doubletsinglet
Overlap genenone
Upstream geneZfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505
Downstream geneLOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-042H15.bB6Ng01-042H15.g
ACCDH868844DH868845
length1,0111,262
definitionDH868844|Mus musculus domesticus DNA, BAC clone: B6Ng01-042H15, 5' end.DH868845|Mus musculus domesticus DNA, BAC clone: B6Ng01-042H15, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttataggatcatcattaagacttgagtctatgtagcattactac
aatatagtacatattcgtggatgtgtgtgctattacttagtgattgttat
atatgtacaataataacaggaaaatcatattaatagcaggaacctttttg
taaattgagtccctcacagccttgcttaatgagggctcacctgtcacaga
ttatattatattccgaggcaggccacttcaggatgatcacctgctggtta
ttagcttgtcccattatggctcctgacatcttttaccttcaaataacata
aatgaagcatatatatctccctttgagtgaaagaactcagtggggaaacc
cccactcagctcccgatttggagtgcacacaagaatcacgaacagaacac
aacatcttgatgtaacaacaagaggtattttaatggcggagctccgggtc
gaaatgtatctcacacaacaggagacagtggattcgaccactagtcttgg
aagctaggggtttttatagaaaaggagtggggctgggggaggaattggca
cggtttcacatgattggtccatttaaacatcagcagcctgtaacatttaa
cttcggtcagagcttgggagatagggaggtgatgggtctgcccgggcatg
tcctgttctgttctgctatgttctcagccccaggtttcaaagctcacaaa
caactctttgggctatttgacatacattacatgaatttacagttttattt
cctttcattcacctcttcttctgtttatactaattctaatcatagaattt
tagagaatggtgtcccctaactctttcattctacctgaactataggttga
tattgcctttgaagaacatgagttttactgtatctattttactctgggat
gaaagccatttcctctattattatacaagggctgaacactaaagctaagc
atatcataaggactgggtctgctacagctgaaattaaagagttatcttag
atggtcgtgat
gaattcaagacccagaaatgaacccacacacctatggacacttgatcttt
gacaagggaactaaacccatccagtggaaaaaaagacagcattttcaaca
aatggtgctggcacagaaggcagtaatcatgtagaagaatgcaaatttat
ccattcttctctccttgtaaaaatctcaagtctaaatgtatcaaaaaaaa
aaaacagagataatgaaatttatagaggagaaagtgggagaaagcctcga
aaatatggccaaaggggaaaaattcctgaacagaacaccaatggcttgtg
ctgtaagatcaagaatcacaaatgggggaggcggcgccatttttgtctca
agacaacaggccaccttcctggtgagagcacaagggtccacccaggccag
agacgtttctgcctcaggctccgcgggggccaccttggctccgggactcc
acggagggcaggctgcacgggtgagggtgtgatatacagaggccagcagt
ttctgggacaggtgagagccacagaccttctgaggcagcgccattttcgg
ctccagacaactggccacctccctggccaaagcaacacagctcctgggaa
agatcctgttttgggccttcatcttcagccaggaggaggtccaaacacca
gataactgtgcaccttccctgaaagaggagagcttgcctgcagagactgc
tctgaccactgaaactcagaggagagagctagtctcccacgtctgctgat
agaaggtaacaaaatcaacggaggaacaatctctaaacaaagacaactat
aacaactaacttccagagattgccagatggcgaaaggtaaacataagtat
cctactaacagaaaccaggaccactcaccatcatcagaacccagaaggcc
cactttgcccagtccagggcaccctaacacacctgaaaaggtagacctgg
atttaaaagcatatctcatgatgatggtagaggacatcaagaaggacttt
atactcacttaaagaaatacaggagaacactgctaagagtacaagtcctt
aaagaaaacaggaaaacaccatcaaactggtagaagtccttaagaaaaca
agaaaccctttcaaatatgtgatggaatgaccataccttctagacctaat
atgaggtaacctataagaaaaacctaagttgagtacctgggatatgaacc
ttgaaagaactggtacctagaggtgcggcatcgtctacagatatccaaag
atgattgacctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_2412022_2412347
seq2: B6Ng01-042H15.b_42_368

seq1  GAATTCTTATAGGATCATCATTAAGACTTGAGTCTATGTAGCATTACTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATAGGATCATCATTAAGACTTGAGTCTATGTAGCATTACTAC  50

seq1  AATATAGTACATATTCGTGGATGTGTGTGCTATTACTTAGTGATTGTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAGTACATATTCGTGGATGTGTGTGCTATTACTTAGTGATTGTTAT  100

seq1  ATATGTACAATAATAACAGGAAAATCATATTAATAGCAGGAACC-TTTCC  149
      |||||||||||||||||||||||||||||||||||||||||||| |||  
seq2  ATATGTACAATAATAACAGGAAAATCATATTAATAGCAGGAACCTTTTTG  150

seq1  TAAAATGAGTCCCTCACAGCCTTGCTTAATGAGGGCTCACCTGTCACAGA  199
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTGAGTCCCTCACAGCCTTGCTTAATGAGGGCTCACCTGTCACAGA  200

seq1  TTATATTATATTCCGAGGCAGGCCACTTCAGGATGATCACCTGTTGGTTA  249
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TTATATTATATTCCGAGGCAGGCCACTTCAGGATGATCACCTGCTGGTTA  250

seq1  TTAGCTTGTCCCATTATGGCTCCTGACATCTTTTTCCTTCGAATAACATA  299
      |||||||||||||||||||||||||||||||||| ||||| |||||||||
seq2  TTAGCTTGTCCCATTATGGCTCCTGACATCTTTTACCTTCAAATAACATA  300

seq1  AATGAAGCGTATATATCTCCCTTTGAG  326
      |||||||| ||||||||||||||||||
seq2  AATGAAGCATATATATCTCCCTTTGAG  327