BAC Information

Click to search

BAC

Clone NameB6Ng01-046M14
Chromosome14 (Build37)Y (Build37)
Map Location 14,424,521 - 14,425,1901,870,346 - 1,870,434
singlet/doubletsingletsinglet
Overlap geneSynpr
Upstream geneCadps, EG432822, LOC100042022, LOC100042026, EG328354
Downstream geneA430083B19Rik, EG382844, LOC100042045, Gm281, Thoc7, Atxn7, Psmd6, Olfr720, LOC667125, LOC100042543, Olfr31, Il3ra, LOC627139, Olfr721-ps1, LOC667152
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-046M14.bB6Ng01-046M14.g
ACCDH871843DH871844
length882500
definitionDH871843|Mus musculus domesticus DNA, BAC clone: B6Ng01-046M14, 5' end.DH871844|Mus musculus domesticus DNA, BAC clone: B6Ng01-046M14, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(14,424,521 - 14,425,190)(1,870,346 - 1,870,434)
sequence
gaattcactgtgtagtagaggatgaccttgaatagctgatcctcctgcct
ccacctcctgagtgctgggattaaaggcttcaccctttctatccagtaaa
ccagggtttccttcctgctaggcaagcactgtaccaatggagctcattca
ttgtgatcatgatgctttttgtaagcttgaagcagtgatgtcagctccaa
acttcccagagaaagtgatcatatgcttccttgggttgttatttcaatct
tgtgaagtaaatattttggagtatcccctgtctagacataaatattaatt
gaatcataacttatgtctcatgctttatttagctgtttgtaccgtgcttt
gtcagttacatcatactttcgattcacattccagttttacatttctaggt
tttgggttttcttttacaattgcggtgagaatttttaaagatgtagacag
acttccatatctctagatttttttcctatgagtatcagaagatatgagta
gaaagttttcagaagcaaatgtatcctaggatgtctgcaaaaaacggctc
agccagcatgatgcttgctgttcaagcaggaggttctgagtttggatggc
catcacccatatacaaagctggcagtggtggcttgcagctgtaacctcag
ccaggaggatccagagatgggaggatccctgctgctcactggctgctgag
ctcacaagtggatgcgctggaggttcagtaaggaccttgtattaaagata
gagtgtgagaaggacaaccaacattgacctccagcttccatgcttacaca
cagcacacacacacacacacacaccctagtgaaaatcttctggactcatg
taccataatgctaacagacatctcactgtaaa
gaattctttgttcagttctgagccccattttttaatggggttgtttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtgcc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ctttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttatccaaacgctgacaccattgcatacactagcaagattttatcga
aaggacccagatgtagctgtctcttgtgagactatgccggggcctagcaa
acacagaagtggatgcccacagtcagctaatggatggatcacagggctcc
caatggaggagctagagaaagtacccaaggagctaaagggatctgcaacc
ctataggtggatcaacattatgaactaaccagtaccctggagctcttgac

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_14424521_14425190
seq2: B6Ng01-046M14.b_46_715 (reverse)

seq1  CCATCTCTGGATCCTCCTGGCTGAGGTTACAGCTGCAAGCCACCACTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTCTGGATCCTCCTGGCTGAGGTTACAGCTGCAAGCCACCACTGCC  50

seq1  AGCTTTGTATATGGGTGATGGCCATCCAAACTCAGAACCTCCTGCTTGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTGTATATGGGTGATGGCCATCCAAACTCAGAACCTCCTGCTTGAA  100

seq1  CAGCAAGCATCATGCTGGCTGAGCCGTTTTTTGCAGACATCCTAGGATAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAGCATCATGCTGGCTGAGCCGTTTTTTGCAGACATCCTAGGATAC  150

seq1  ATTTGCTTCTGAAAACTTTCTACTCATATCTTCTGATACTCATAGGAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCTTCTGAAAACTTTCTACTCATATCTTCTGATACTCATAGGAAAA  200

seq1  AAATCTAGAGATATGGAAGTCTGTCTACATCTTTAAAAATTCTCACCGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTAGAGATATGGAAGTCTGTCTACATCTTTAAAAATTCTCACCGCA  250

seq1  ATTGTAAAAGAAAACCCAAAACCTAGAAATGTAAAACTGGAATGTGAATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTAAAAGAAAACCCAAAACCTAGAAATGTAAAACTGGAATGTGAATC  300

seq1  GAAAGTATGATGTAACTGACAAAGCACGGTACAAACAGCTAAATAAAGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTATGATGTAACTGACAAAGCACGGTACAAACAGCTAAATAAAGCA  350

seq1  TGAGACATAAGTTATGATTCAATTAATATTTATGTCTAGACAGGGGATAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACATAAGTTATGATTCAATTAATATTTATGTCTAGACAGGGGATAC  400

seq1  TCCAAAATATTTACTTCACAAGATTGAAATAACAACCCAAGGAAGCATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAATATTTACTTCACAAGATTGAAATAACAACCCAAGGAAGCATAT  450

seq1  GATCACTTTCTCTGGGAAGTTTGGAGCTGACATCACTGCTTCAAGCTTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCACTTTCTCTGGGAAGTTTGGAGCTGACATCACTGCTTCAAGCTTAC  500

seq1  AAAAAGCATCATGATCACAATGAATGAGCTCCATTGGTACAGTGCTTGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGCATCATGATCACAATGAATGAGCTCCATTGGTACAGTGCTTGCC  550

seq1  TAGCAGGAAGGAAACCCTGGTTTACTGGATAGAAAGGGTGAAGCCTTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGGAAGGAAACCCTGGTTTACTGGATAGAAAGGGTGAAGCCTTTAA  600

seq1  TCCCAGCACTCAGGAGGTGGAGGCAGGAGGATCAGCTATTCAAGGTCATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGCACTCAGGAGGTGGAGGCAGGAGGATCAGCTATTCAAGGTCATC  650

seq1  CTCTACTACACAGTGAATTC  670
      ||||||||||||||||||||
seq2  CTCTACTACACAGTGAATTC  670

seq1: chrY_1870346_1870434
seq2: B6Ng01-046M14.g_478_566

seq1  CTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGA  50

seq1  ACAACATTATGAACTAACCATTACCCCTGAGCTCTTGAC  89
       ||||||||||||||||||| |||||  |||||||||||
seq2  TCAACATTATGAACTAACCAGTACCCTGGAGCTCTTGAC  89