BAC Information

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BAC

Clone NameB6Ng01-047G15
ChromosomeY (Build37)
Map Location 849,009 - 850,146
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039202, Zfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y
Downstream geneLOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-047G15.bB6Ng01-047G15.g
ACCDH872282DH872283
length1,1291,239
definitionDH872282|Mus musculus domesticus DNA, BAC clone: B6Ng01-047G15, 5' end.DH872283|Mus musculus domesticus DNA, BAC clone: B6Ng01-047G15, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttgtgcagtttataaagcagggatcttgtccctggaattatgt
gcaatatctaattctgcagtaataggcaccaaggatatagtgtcacttgt
caaaactaggtaaatggaatcatggttgttttgtggcccaacaccatagg
ctcttgagaccataatgggcttgactgtgcctctaggactacttagtgag
cttgtgtagccaggtcaccctctacctagacacccagcttctgtttgcct
tggaccagggtaagaagtttcagaactaccataatgttcaaggacatagg
atccaaatttgtcattctttggtcacagcctgttcaagtgaaccttcagg
tttgtgttcacaggtttctatcctcctggggttaggctttacctgtggtt
aaatcctttgtgtgagaagcaaaaaacagagcataagtcagtcatgtggg
acattcagagctacagagcttggtcaatgagaagtcttagtcctcagaga
acctcaatcagcttaagactagcttatattggtattttcctgtcagggag
ccaacctttttggaatgtccatttcggcctttcactctttctgaacgggt
gctatcccttctgcctattagtcattagtttgcattgagcctataaggct
ccaattttcaagtgtgaaagagactgttaccctccctcacccccagtatt
gccctgtcatcctgaaatgcctctggatagaaaaatgattcacattggga
gaagcctgtcaagcagagttttacagagctaattgttaaggaataggtag
gtaggtagactgtactccccttggggctcctgttctatcttgagattatt
atccccctactttttgatatttctccaataccttggacaaagaagattgt
tgttcttttgagacacaatccctattgtgctgagaatttcagaaactgct
tttttctctatgatgctattctcttctttatgattttgaatgcaaatgtc
tacttaattggacatttcaaagtcttcatggttctgggactattggttat
gacatcttggacaaaaggatggcagaattagcagcagtcttacttttctg
agctggttctcacgcaacctctcagccac
gaattccatgatcgtgggcccactgtcacacttctctggctgtgaaatga
gttccttggtcagaagcaatactgtgtggaataccatgatgatagaaaag
gcattctgtcagtccgtggatagaggcattacatgcaggaaaggcaacta
cataaccagaataagtatttactctaagtaagaacaaaacgctgtccttt
ccacgaaggaagtggtccaatgtagtcaacctgccaccaggttgctggct
ggtcaccttgaggaatggtgccatatctggggctcagtgttggtttctgc
tgttgggagacatggcattcagcagcagctgtagccaggtcagccttggt
gagtggaagtccgtgttgctgagctcaagcataaactccatctcaaccac
catggccactttgttcatgtgcccattgaccaatgactgggatggctggg
gagagaggctgactgtccacagaacggttcatcttatccacttgattatt
gaactcctcctcggctgaagtcaccttttggtgagcatttacatgggaca
caaatatcttcacatccattgcccatttggagagatctatccacatactt
cttccccagatgactttctcaccaattttccaattgcgatctttccaagt
gcctgaccatccagccaatccattggctacagcccatgagtcagtgaata
atcatacatctggccatttcttcttacaaacaaactgtaataccatgtgt
actgcccgaagttctgcccactgtgaagatttcccttcccctgtgtcttt
cagggttatcccagaaaggggttgtaatgctgcagctgtccacttctggg
tggtgcctgtataatgtgcagagccatcagtaaacccggccctagtcttc
tctcttcgtcagtcattcacagggacaccctatgagtataggcacatgct
ggcagcagatggcattgtaaacatagcatttggacacttaactgctatgc
ttcagacctgctctggccatccataatacacttcatttgataaacagaac
tgctgctgtgcgggtccctttatgacttgaaaggtctgaagtaccggctc
aggatgggtgttcaggtgcatgataacctgttcctatgtcaacatcagtt
cacctaagagactataaccgcagcgtttcaaggaatgattgctcgtgcgc
gagatgataagactttgttcgcaacttcaccaaggatgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_849009_850146
seq2: B6Ng01-047G15.b_45_1173 (reverse)

seq1  GTGGCTGA-------------AAACAGCTTCTGAAAAGTAAGACCTGCCT  37
      ||||||||             || |||| || ||||||||||| ||| ||
seq2  GTGGCTGAGAGGTTGCGTGAGAACCAGC-TCAGAAAAGTAAGA-CTG-CT  47

seq1  GCCTAATACTGCCATCCTTATGTCAAGAATGTCATAACACCACTAAGTCC  87
      | ||||| ||||||||||| |||| |  ||||||||  |||| | |||||
seq2  G-CTAATTCTGCCATCCTTTTGTCCAAGATGTCATA--ACCAAT-AGTCC  93

seq1  CAGAAACCCATGAAGACTTTTGAAATGTCCCAATATAGTTAAGACATTTG  137
      |||||  |||||||||| |||||||||| |||||  |||  |||||||||
seq2  CAGAA--CCATGAAGAC-TTTGAAATGT-CCAATTAAGT--AGACATTTG  137

seq1  CATTCCAAAAATCATAAAG-AGAGAATAGCCAATTCATAGAGAAAAAAGC  186
      |||||  |||||||||||| ||||||||||    ||||||||||||||||
seq2  CATTC--AAAATCATAAAGAAGAGAATAGC---ATCATAGAGAAAAAAGC  182

seq1  AGTTTCTGAAATTCTCAGCACCAATAGGGATTGTTGTTCCTCCAAAAGAA  236
      |||||||||||||||||||| |||||||||||| |||  || ||||||||
seq2  AGTTTCTGAAATTCTCAGCA-CAATAGGGATTG-TGT--CT-CAAAAGAA  227

seq1  CAACAATCTTCTTTGTCCAAGGTATTGGAGAAATATCAAAAAGTAGGGGG  286
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAATCTTCTTTGTCCAAGGTATTGGAGAAATATCAAAAAGTAGGGGG  277

seq1  ATAATAATCTCAAGATAGAACAGGAGCCCCAAGGGGAGTACAGTCTACCT  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAATCTCAAGATAGAACAGGAGCCCCAAGGGGAGTACAGTCTACCT  327

seq1  ACCTACCTATTCCTTAACAATTAGCTCTGTAAAACTCTGCTTGACAGGCT  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACCTATTCCTTAACAATTAGCTCTGTAAAACTCTGCTTGACAGGCT  377

seq1  TCTCCCAATGTGAATCATTTTTCTATCCAGAGGCATTTCAGGATGACAGG  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCAATGTGAATCATTTTTCTATCCAGAGGCATTTCAGGATGACAGG  427

seq1  GCAATACTGGGGGTGAGGGAGGGTAACAGTCTCTTTCACACTTGAAAATT  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATACTGGGGGTGAGGGAGGGTAACAGTCTCTTTCACACTTGAAAATT  477

seq1  GGAGCCTTATAGGCTCAATGCAAACTAATGACTAATAGGCAGAAGGGATA  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCTTATAGGCTCAATGCAAACTAATGACTAATAGGCAGAAGGGATA  527

seq1  GCACCCGTTCAGAAAGAGTGAAAGGCCGAAATGGACATTCCAAAAAGGTT  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCCGTTCAGAAAGAGTGAAAGGCCGAAATGGACATTCCAAAAAGGTT  577

seq1  GGCTCCCTGACAGGAAAATACCAATATAAGCTAGTCTTAAGCTGATTGAG  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCCTGACAGGAAAATACCAATATAAGCTAGTCTTAAGCTGATTGAG  627

seq1  GTTCTCTGAGGACTAAGACTTCTCATTGACCAAGCTCTGTAGCTCTGAAT  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCTGAGGACTAAGACTTCTCATTGACCAAGCTCTGTAGCTCTGAAT  677

seq1  GTCCCACATGACTGACTTATGCTCTGTTTTTTGCTTCTCACACAAAGGAT  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCACATGACTGACTTATGCTCTGTTTTTTGCTTCTCACACAAAGGAT  727

seq1  TTAACCACAGGTAAAGCCTAACCCCAGGAGGATAGAAACCTGTGAACACA  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCACAGGTAAAGCCTAACCCCAGGAGGATAGAAACCTGTGAACACA  777

seq1  AACCTGAAGGTTCACTTGAACAGGCTGTGACCAAAGAATGACAAATTTGG  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGAAGGTTCACTTGAACAGGCTGTGACCAAAGAATGACAAATTTGG  827

seq1  ATCCTATGTCCTTGAACATTATGGTAGTTCTGAAACTTCTTACCCTGGTC  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTATGTCCTTGAACATTATGGTAGTTCTGAAACTTCTTACCCTGGTC  877

seq1  CAAGGCAAACAGAAGCTGGGTGTCTAGGTAGAGGGTGACCTGGCTACACA  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCAAACAGAAGCTGGGTGTCTAGGTAGAGGGTGACCTGGCTACACA  927

seq1  AGCTCACTAAGTAGTCCTAGAGGCACAGTCAAGCCCATTATGGTCTCAAG  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCACTAAGTAGTCCTAGAGGCACAGTCAAGCCCATTATGGTCTCAAG  977

seq1  AGCCTATGGTGTTGGGCCACAAAACAACCATGATTCCATTTACCTAGTTT  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTATGGTGTTGGGCCACAAAACAACCATGATTCCATTTACCTAGTTT  1027

seq1  TGACAAGTGACACTATATCCTTGGTGCCTATTACTGCAGAATTAGATATT  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAGTGACACTATATCCTTGGTGCCTATTACTGCAGAATTAGATATT  1077

seq1  GCACATAATTCCAGGGACAAGATCCCTGCTTTATAAACTGCACAAAGAAT  1136
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATAATTCCAGGGACAAGATCCCTGCTTTATAAACTGCACAAAGAAT  1127

seq1  TC  1138
      ||
seq2  TC  1129