BAC Information

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BAC

Clone NameB6Ng01-050G14
Chromosome16 (Build37)Y (Build37)
Map Location 86,897,330 - 86,898,211573,361 - 573,553
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneAdamts5, LOC100040025, LOC100039780
Downstream geneN6amt1, Zfp294, ORF5, LOC100040088, Usp16, Cct8, B130034C11Rik, LOC435486, ORF63, Bach1, LOC100039901, Grik1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-050G14.bB6Ng01-050G14.g
ACCDH874366DH874367
length886494
definitionDH874366|Mus musculus domesticus DNA, BAC clone: B6Ng01-050G14, 5' end.DH874367|Mus musculus domesticus DNA, BAC clone: B6Ng01-050G14, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(86,897,330 - 86,898,211)(573,361 - 573,553)
sequence
gaattccaaactgtggtcatgcagaaacctctgcttaaacctattgagtt
tcaaaacaaaatataaagtcatgaatacaaaagagaatattatagagaat
gaggagctcaatatggctgggtgagagatgaggaggtttggggtgagaat
atattgcaaacatggaagaaaatatcaatgaagaaatttaataaaatttt
aatctcataattataagtattttccctattttaatttcttttaatttcaa
catatcaataaataatgtttacaattttctaggtgatattttagcccttt
ttgtttctttgaattagactgaatcagaccatgagtataacataaaagta
tatgagttccccatatgctatatctatttctgagagaactaaggaataaa
gagacagctatacatcaatagttgaagacttcagcacaccatttccaata
ataggaaatcagctagtcagaggatgagtaaggagaccgaagacatggtg
aaatagcctacttaacagacacaacacatgtacagaacatatccagaaca
atagatatgagtaataacgtctatgtgtgtatgtgtaattaaacacgttt
tgaaaaatgtaaaaaccattaaattcatagcaaatatctttccaggcaca
gtggaattagagaagaaaacaatagaaaatggaatattaaaaatttcata
gaacactccttttgtatctctctttgaggacagtagggttaatgagagca
ttcacctggggtgcccagggtgctctctctagtttaagactttcatggac
ttactttttccttttgctgggtaaggcaatgatccacaggaccaaattat
ttaccaccgggattttgcattgagttatgaatttag
ctgatctttccaagacttttaatatgaagggatgctgaattttatcaatt
gctttttcaacatctaatgagtttatttatgtagtggattactttgactg
atttcagtgtattgaatcatctctgcatccttgaaatgaaacctacttga
tcatgagtaatcatcattttgatgtgtttgtggattcagtgggcaagaat
tttattgagaatttttgtatcagtgttcataaaggagattgatatgaagt
tctctttcttcatttggtctttgtgtggtttaggtataagtgtaattgtg
gcacctgcaaccctataggtggaacaacaatatgaacgaaccagtacccc
ccagagctcaagtctctagctgcgtatgtatcagaagatggcctagtcgg
ccatcagtggaaagagaggcccattggtcgtgcaaactttatatgcctca
gtataggggaacaccagggccaagaagtgggagtgggagggtag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_86897330_86898211
seq2: B6Ng01-050G14.b_47_932 (reverse)

seq1  CTAAATACATAACATCAATGCAAAAATACCAGGTGTAAATAATTGGTACC  50
      |||||| |||||| ||||||| ||||| || |  |||||||||| |  ||
seq2  CTAAATTCATAAC-TCAATGC-AAAATCCCGGTGGTAAATAATTTGGTCC  48

seq1  TGT-GATCATTGCCTTACCCAGC-AAAGGAAAAGTTAAGTCCATGAAAGT  98
      ||| ||||||||||||||||||| |||||||||  |||||||||||||||
seq2  TGTGGATCATTGCCTTACCCAGCAAAAGGAAAAAGTAAGTCCATGAAAGT  98

seq1  CTTAAACTAGAGAGAGCACCCTGGGCA-CCCAGGTGAATGCTCTCA-TAA  146
      ||||||||||||||||||||||||||| |||||||||||||||||| |||
seq2  CTTAAACTAGAGAGAGCACCCTGGGCACCCCAGGTGAATGCTCTCATTAA  148

seq1  CCCTACTGTCCTCAAAGAGAGATAC-AAAGGAGTGTTCTATGAAATTTTT  195
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CCCTACTGTCCTCAAAGAGAGATACAAAAGGAGTGTTCTATGAAATTTTT  198

seq1  AATATTCCATTTTCTATTGTTTTCTTCTCTAATTCCACTGTGCCTGGAAA  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTCCATTTTCTATTGTTTTCTTCTCTAATTCCACTGTGCCTGGAAA  248

seq1  GATATTTGCTATGAATTTAATGG-TTTTACATTTTTCAAAACGTGTTTAA  294
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GATATTTGCTATGAATTTAATGGTTTTTACATTTTTCAAAACGTGTTTAA  298

seq1  TTACACATACACACATAGACGTTATTACTCATATCTATTGTTCTGGATAT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACATACACACATAGACGTTATTACTCATATCTATTGTTCTGGATAT  348

seq1  GTTCTGTACATGTGTTGTGTCTGTTAAGTAGGCTATTTCACCATGTCTTC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGTACATGTGTTGTGTCTGTTAAGTAGGCTATTTCACCATGTCTTC  398

seq1  GGTCTCCTTACTCATCCTCTGACTAGCTGATTTCCTATTATTGGAAATGG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCCTTACTCATCCTCTGACTAGCTGATTTCCTATTATTGGAAATGG  448

seq1  TGTGCTGAAGTCTTCAACTATTGATGTATAGCTGTCTCTTTATTCCTTAG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTGAAGTCTTCAACTATTGATGTATAGCTGTCTCTTTATTCCTTAG  498

seq1  TTCTCTCAGAAATAGATATAGCATATGGGGAACTCATATACTTTTATGTT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTCAGAAATAGATATAGCATATGGGGAACTCATATACTTTTATGTT  548

seq1  ATACTCATGGTCTGATTCAGTCTAATTCAAAGAAACAAAAAGGGCTAAAA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCATGGTCTGATTCAGTCTAATTCAAAGAAACAAAAAGGGCTAAAA  598

seq1  TATCACCTAGAAAATTGTAAACATTATTTATTGATATGTTGAAATTAAAA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACCTAGAAAATTGTAAACATTATTTATTGATATGTTGAAATTAAAA  648

seq1  GAAATTAAAATAGGGAAAATACTTATAATTATGAGATTAAAATTTTATTA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTAAAATAGGGAAAATACTTATAATTATGAGATTAAAATTTTATTA  698

seq1  AATTTCTTCATTGATATTTTCTTCCATGTTTGCAATATATTCTCACCCCA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTTCATTGATATTTTCTTCCATGTTTGCAATATATTCTCACCCCA  748

seq1  AACCTCCTCATCTCTCACCCAGCCATATTGAGCTCCTCATTCTCTATAAT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCCTCATCTCTCACCCAGCCATATTGAGCTCCTCATTCTCTATAAT  798

seq1  ATTCTCTTTTGTATTCATGACTTTATATTTTGTTTTGAAACTCAATAGGT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCTTTTGTATTCATGACTTTATATTTTGTTTTGAAACTCAATAGGT  848

seq1  TTAAGCAGAGGTTTCTGCATGACCACAGTTTGGAATTC  882
      ||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCAGAGGTTTCTGCATGACCACAGTTTGGAATTC  886

seq1: chrY_573361_573553
seq2: B6Ng01-050G14.g_378_567

seq1  CTGCAAACCTATAGATGGAACAACAATATGAA-TAACCAGTA-TCCACAG  48
      |||||| ||||||| |||||||||||||||||  ||||||||  || |||
seq2  CTGCAACCCTATAGGTGGAACAACAATATGAACGAACCAGTACCCCCCAG  50

seq1  AGCTCATGTCTCTAGCTGCATATGTATCAGAAGATGGCCTAGTTGGCCAT  98
      |||||| |||||||||||| ||||||||||||||||||||||| ||||||
seq2  AGCTCAAGTCTCTAGCTGCGTATGTATCAGAAGATGGCCTAGTCGGCCAT  100

seq1  CATTGGGAAGAGAGGCCCCTTGGTCTTGCAAACTTTATATGCCCCAGTAC  148
      || ||| ||||||||||| |||||| ||||||||||||||||| ||||| 
seq2  CAGTGGAAAGAGAGGCCCATTGGTCGTGCAAACTTTATATGCCTCAGTAT  150

seq1  AGGGGAACACCAGGGCCAAGAAGTGGGAGAAGGTGGGTAGGGTAG  193
      ||||||||||||||||||||||||||||    ||||| |||||||
seq2  AGGGGAACACCAGGGCCAAGAAGTGGGA----GTGGG-AGGGTAG  190